miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31042 3' -64.2 NC_006560.1 + 95156 1.07 0.000723
Target:  5'- gCGCUCGCUGGCGAGCCUGGGGCGCUGc -3'
miRNA:   3'- -GCGAGCGACCGCUCGGACCCCGCGAC- -5'
31042 3' -64.2 NC_006560.1 + 55440 0.78 0.0918
Target:  5'- gCGCagGCgGGCGAGCCcGGGGCGCc- -3'
miRNA:   3'- -GCGagCGaCCGCUCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 69521 0.78 0.096562
Target:  5'- aGCaC-CUGGCGAGCCUGcggcGGGCGCUGg -3'
miRNA:   3'- gCGaGcGACCGCUCGGAC----CCCGCGAC- -5'
31042 3' -64.2 NC_006560.1 + 145826 0.77 0.109509
Target:  5'- gGcCUCGCgcGGCGGGCCgGGGGCGCc- -3'
miRNA:   3'- gC-GAGCGa-CCGCUCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 140461 0.77 0.109509
Target:  5'- gGCUUGCgaucgcGGCGGGCCgggGGGGCGgaGg -3'
miRNA:   3'- gCGAGCGa-----CCGCUCGGa--CCCCGCgaC- -5'
31042 3' -64.2 NC_006560.1 + 33764 0.76 0.11513
Target:  5'- aCGCUCGCgGGUcgccucgcgGGGCCgUGGGGCGCg- -3'
miRNA:   3'- -GCGAGCGaCCG---------CUCGG-ACCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 27626 0.76 0.124069
Target:  5'- aGCUCGCggcgGGCGcGGCCgggcgcGGGGCGCg- -3'
miRNA:   3'- gCGAGCGa---CCGC-UCGGa-----CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 146514 0.75 0.143904
Target:  5'- aGCUgCGCcgGGCGGGCCggcgcgucggGGGGCGCg- -3'
miRNA:   3'- gCGA-GCGa-CCGCUCGGa---------CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 75773 0.74 0.172335
Target:  5'- aGC-CGCUGGCGcGCCUgcugcgccuggcggaGGGGCuGCUGg -3'
miRNA:   3'- gCGaGCGACCGCuCGGA---------------CCCCG-CGAC- -5'
31042 3' -64.2 NC_006560.1 + 31847 0.72 0.221749
Target:  5'- gCGCgacgCGCgGGgGGGCCgaggGGGGCGCc- -3'
miRNA:   3'- -GCGa---GCGaCCgCUCGGa---CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 70442 0.72 0.221749
Target:  5'- gGC-CGCccUGGCGGGCCUGcGGGcCGCg- -3'
miRNA:   3'- gCGaGCG--ACCGCUCGGAC-CCC-GCGac -5'
31042 3' -64.2 NC_006560.1 + 130401 0.72 0.243332
Target:  5'- aCGCgagcgCGCUGGCGGcCCUGGaGCGCg- -3'
miRNA:   3'- -GCGa----GCGACCGCUcGGACCcCGCGac -5'
31042 3' -64.2 NC_006560.1 + 94782 0.71 0.248994
Target:  5'- gCGCgCGUUcGGCGAgcGCCUGGcGGCGCg- -3'
miRNA:   3'- -GCGaGCGA-CCGCU--CGGACC-CCGCGac -5'
31042 3' -64.2 NC_006560.1 + 31941 0.71 0.248994
Target:  5'- gCGCgCGCggggGGCG-GCCgggcgGGGGCGCg- -3'
miRNA:   3'- -GCGaGCGa---CCGCuCGGa----CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 131108 0.71 0.254764
Target:  5'- aCGCcgaGCUGGCGggGGCCUggcccgcggccGGGGCGCg- -3'
miRNA:   3'- -GCGag-CGACCGC--UCGGA-----------CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 95557 0.71 0.260644
Target:  5'- aGCUCGCgcgguucaucaUGG-GGGCCgGGGGCGCc- -3'
miRNA:   3'- gCGAGCG-----------ACCgCUCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 19392 0.71 0.260644
Target:  5'- uCGCUCGCggcacgggccgGGCGAGUCgccgcGGcGGCGCUc -3'
miRNA:   3'- -GCGAGCGa----------CCGCUCGGa----CC-CCGCGAc -5'
31042 3' -64.2 NC_006560.1 + 66928 0.71 0.275206
Target:  5'- cCGC-CGCggcccccgccccggGGCGGGCCUuGGGCGCg- -3'
miRNA:   3'- -GCGaGCGa-------------CCGCUCGGAcCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 33663 0.7 0.291708
Target:  5'- gGC-CGCUuaGGCGAGCCcgGcGGGCGuCUGc -3'
miRNA:   3'- gCGaGCGA--CCGCUCGGa-C-CCCGC-GAC- -5'
31042 3' -64.2 NC_006560.1 + 25129 0.7 0.298258
Target:  5'- gCGCgCGCUGG--GGCCUGGGuGCGCc- -3'
miRNA:   3'- -GCGaGCGACCgcUCGGACCC-CGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.