miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31042 3' -64.2 NC_006560.1 + 74328 0.66 0.488461
Target:  5'- cCGC-CGCcGGCG-GCCUGGcucccgagacgcGGCGcCUGg -3'
miRNA:   3'- -GCGaGCGaCCGCuCGGACC------------CCGC-GAC- -5'
31042 3' -64.2 NC_006560.1 + 69878 0.67 0.479387
Target:  5'- cCGCUCGgUcGCGuucGcCCUGcGGGUGCUGg -3'
miRNA:   3'- -GCGAGCgAcCGCu--C-GGAC-CCCGCGAC- -5'
31042 3' -64.2 NC_006560.1 + 33545 0.67 0.479387
Target:  5'- uCGCgCGCcguagGGCcugccGAGCCgggGGGGCGCc- -3'
miRNA:   3'- -GCGaGCGa----CCG-----CUCGGa--CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 147206 0.67 0.470396
Target:  5'- cCGC-CGgaGGCGcggggGGCC-GGGGCGCc- -3'
miRNA:   3'- -GCGaGCgaCCGC-----UCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 102822 0.67 0.470396
Target:  5'- uCGCgCGCcGGCGAcGCgaGGGGgGCg- -3'
miRNA:   3'- -GCGaGCGaCCGCU-CGgaCCCCgCGac -5'
31042 3' -64.2 NC_006560.1 + 80540 0.67 0.461492
Target:  5'- aGCgCGCUGGCGguccucaucgaGGCCUGucGGCGCc- -3'
miRNA:   3'- gCGaGCGACCGC-----------UCGGACc-CCGCGac -5'
31042 3' -64.2 NC_006560.1 + 118498 0.67 0.461492
Target:  5'- uCGCUCGUggagUGGCuGGaCCgcgggugGGaGGCGCUGg -3'
miRNA:   3'- -GCGAGCG----ACCGcUC-GGa------CC-CCGCGAC- -5'
31042 3' -64.2 NC_006560.1 + 51624 0.67 0.461492
Target:  5'- gGCgggCGC-GGCGAGCCcgccGuGGGCGCc- -3'
miRNA:   3'- gCGa--GCGaCCGCUCGGa---C-CCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 45981 0.67 0.452678
Target:  5'- gCGCcaCGCgguagGGCGccccGGCCgucgGGGGCGCg- -3'
miRNA:   3'- -GCGa-GCGa----CCGC----UCGGa---CCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 48347 0.67 0.451802
Target:  5'- aCGCU-GCccGGCGAcguggugGCCUGGGGCGaCg- -3'
miRNA:   3'- -GCGAgCGa-CCGCU-------CGGACCCCGC-Gac -5'
31042 3' -64.2 NC_006560.1 + 87849 0.67 0.43533
Target:  5'- uCGCUCGa-GGUGAcgaagGCCgcggUGGGGCGCg- -3'
miRNA:   3'- -GCGAGCgaCCGCU-----CGG----ACCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 135986 0.68 0.426801
Target:  5'- gCGCgCGgUGGCG-GCCgGGGGCGg-- -3'
miRNA:   3'- -GCGaGCgACCGCuCGGaCCCCGCgac -5'
31042 3' -64.2 NC_006560.1 + 70174 0.68 0.426801
Target:  5'- aCGC-C-CUGGCG-GCCcGGGGCGUg- -3'
miRNA:   3'- -GCGaGcGACCGCuCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 44774 0.68 0.426801
Target:  5'- gGCcaUCGCcGaGCGGGCuCUGGGGCuCUGc -3'
miRNA:   3'- gCG--AGCGaC-CGCUCG-GACCCCGcGAC- -5'
31042 3' -64.2 NC_006560.1 + 15336 0.68 0.418372
Target:  5'- cCGUUCGCggccGGCGcGGCC-GGGGuCGCg- -3'
miRNA:   3'- -GCGAGCGa---CCGC-UCGGaCCCC-GCGac -5'
31042 3' -64.2 NC_006560.1 + 25879 0.68 0.410045
Target:  5'- gCGCUccCGCcGGCGugGGCCgcgcgccuccgaUGGGGCGCg- -3'
miRNA:   3'- -GCGA--GCGaCCGC--UCGG------------ACCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 52329 0.68 0.410045
Target:  5'- gGCUCGUcGGCGcGGCC-GuGGGCGCc- -3'
miRNA:   3'- gCGAGCGaCCGC-UCGGaC-CCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 77657 0.68 0.410045
Target:  5'- uGC-CGCUGGgaCGAGCUgggGuGGGCGCg- -3'
miRNA:   3'- gCGaGCGACC--GCUCGGa--C-CCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 114335 0.68 0.410045
Target:  5'- uGCaaccCGCgggGGCGcgcGGCCgGGGGCGCg- -3'
miRNA:   3'- gCGa---GCGa--CCGC---UCGGaCCCCGCGac -5'
31042 3' -64.2 NC_006560.1 + 131386 0.68 0.410045
Target:  5'- gCGCggUGCUGGCGGGCgCUGGccgcGGaCGCg- -3'
miRNA:   3'- -GCGa-GCGACCGCUCG-GACC----CC-GCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.