miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31042 5' -57 NC_006560.1 + 22292 0.66 0.865694
Target:  5'- gGGCGGCGCGccgcacgccggcGaCGAGCUCGcGGAGc-- -3'
miRNA:   3'- -UCGUCGCGC------------C-GCUCGAGCuCUUCuac -5'
31042 5' -57 NC_006560.1 + 148784 0.66 0.865694
Target:  5'- aGGgGGCG-GGCGGGCcggcccccCGAGGAGAg- -3'
miRNA:   3'- -UCgUCGCgCCGCUCGa-------GCUCUUCUac -5'
31042 5' -57 NC_006560.1 + 99888 0.66 0.865694
Target:  5'- cGUGGCgGCGGCGGGCggcgCGGGGuucAUGu -3'
miRNA:   3'- uCGUCG-CGCCGCUCGa---GCUCUuc-UAC- -5'
31042 5' -57 NC_006560.1 + 79844 0.66 0.865694
Target:  5'- cGGCGGCGCGGacCGAGC-CGGGc----- -3'
miRNA:   3'- -UCGUCGCGCC--GCUCGaGCUCuucuac -5'
31042 5' -57 NC_006560.1 + 13084 0.66 0.865694
Target:  5'- gGGCccuuGGCGCGGU--GCUCGA--AGAUGa -3'
miRNA:   3'- -UCG----UCGCGCCGcuCGAGCUcuUCUAC- -5'
31042 5' -57 NC_006560.1 + 98443 0.66 0.865694
Target:  5'- uGGCgGGCgGCGGCGAGgaCGgcgcGGAGGAc- -3'
miRNA:   3'- -UCG-UCG-CGCCGCUCgaGC----UCUUCUac -5'
31042 5' -57 NC_006560.1 + 39635 0.66 0.864942
Target:  5'- cGGCguccgGGCGCGGCGGagucuccGCUCGGGccGcgGc -3'
miRNA:   3'- -UCG-----UCGCGCCGCU-------CGAGCUCuuCuaC- -5'
31042 5' -57 NC_006560.1 + 147276 0.66 0.864942
Target:  5'- uGGCGGCcggggccggGCGGgGGGCUCuGgcgggcgccgggcGGAAGGUGg -3'
miRNA:   3'- -UCGUCG---------CGCCgCUCGAG-C-------------UCUUCUAC- -5'
31042 5' -57 NC_006560.1 + 3362 0.66 0.858071
Target:  5'- cGGCgucGGCGuCGGCGGGCgggCGGGcGGGc- -3'
miRNA:   3'- -UCG---UCGC-GCCGCUCGa--GCUCuUCUac -5'
31042 5' -57 NC_006560.1 + 131848 0.66 0.858071
Target:  5'- cGGCGGCgGCGGCGAcgcggcgcgcGCUgCGGGgcGcgGu -3'
miRNA:   3'- -UCGUCG-CGCCGCU----------CGA-GCUCuuCuaC- -5'
31042 5' -57 NC_006560.1 + 45732 0.66 0.858071
Target:  5'- cGCAgGCGCGccGCGGGCUCGcgcccccgccAGggGuUGg -3'
miRNA:   3'- uCGU-CGCGC--CGCUCGAGC----------UCuuCuAC- -5'
31042 5' -57 NC_006560.1 + 27283 0.66 0.850243
Target:  5'- cGGgGGCGgGGCGcggGGCgCGGGGAGGg- -3'
miRNA:   3'- -UCgUCGCgCCGC---UCGaGCUCUUCUac -5'
31042 5' -57 NC_006560.1 + 31939 0.66 0.850243
Target:  5'- aAGCGcGCGCGGgGGGCggcCGGGcGGGg- -3'
miRNA:   3'- -UCGU-CGCGCCgCUCGa--GCUCuUCUac -5'
31042 5' -57 NC_006560.1 + 55030 0.66 0.850243
Target:  5'- aGGC-GCGCGGCGAGa-CGAGcgacGGAUc -3'
miRNA:   3'- -UCGuCGCGCCGCUCgaGCUCu---UCUAc -5'
31042 5' -57 NC_006560.1 + 115065 0.66 0.850243
Target:  5'- cGCGGCGCuGC-AGCgcugCGAGGgccGGGUGg -3'
miRNA:   3'- uCGUCGCGcCGcUCGa---GCUCU---UCUAC- -5'
31042 5' -57 NC_006560.1 + 131439 0.66 0.850243
Target:  5'- cGCGGCGCuGGCccuGGCcgaggcgCGAGAGGAg- -3'
miRNA:   3'- uCGUCGCG-CCGc--UCGa------GCUCUUCUac -5'
31042 5' -57 NC_006560.1 + 57343 0.66 0.842216
Target:  5'- gGGCAGgcCGCGGCGAaGCggccUCGGGcGGAg- -3'
miRNA:   3'- -UCGUC--GCGCCGCU-CG----AGCUCuUCUac -5'
31042 5' -57 NC_006560.1 + 42934 0.66 0.842216
Target:  5'- cGGUAGCGCGGCGccGGCUCcagccccgcGggGGc- -3'
miRNA:   3'- -UCGUCGCGCCGC--UCGAGcu-------CuuCUac -5'
31042 5' -57 NC_006560.1 + 4046 0.66 0.842216
Target:  5'- cGGCGGCGCGGCGccGGC-CGcGgcGGc- -3'
miRNA:   3'- -UCGUCGCGCCGC--UCGaGCuCuuCUac -5'
31042 5' -57 NC_006560.1 + 2459 0.66 0.842216
Target:  5'- cGGCccaGGCGCGGCGGcggcGCgUCGGGGuAGAg- -3'
miRNA:   3'- -UCG---UCGCGCCGCU----CG-AGCUCU-UCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.