miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31043 3' -61.3 NC_006560.1 + 131863 0.66 0.71793
Target:  5'- cGCGGCgCGcGCUgcGGGGCGCG---GUCGCg -3'
miRNA:   3'- -UGCCG-GU-UGG--UCCCGCGCuggCAGCG- -5'
31043 3' -61.3 NC_006560.1 + 88353 0.66 0.71793
Target:  5'- -aGGaaCCGGCCGuGGGCGCGccaggcacccccGCCGUgcugCGCg -3'
miRNA:   3'- ugCC--GGUUGGU-CCCGCGC------------UGGCA----GCG- -5'
31043 3' -61.3 NC_006560.1 + 47621 0.66 0.71793
Target:  5'- -aGGUCGcCCAGGagguggaCGUGGCCGuUCGCg -3'
miRNA:   3'- ugCCGGUuGGUCCc------GCGCUGGC-AGCG- -5'
31043 3' -61.3 NC_006560.1 + 86976 0.66 0.71793
Target:  5'- cUGGCCGGCCAGacgcagcaGGCacguguagacGCGgaucugcugGCCGUCGUa -3'
miRNA:   3'- uGCCGGUUGGUC--------CCG----------CGC---------UGGCAGCG- -5'
31043 3' -61.3 NC_006560.1 + 29695 0.66 0.71793
Target:  5'- gACGacgaCGACgGGGGcCGCGACCGcccCGCc -3'
miRNA:   3'- -UGCcg--GUUGgUCCC-GCGCUGGCa--GCG- -5'
31043 3' -61.3 NC_006560.1 + 51730 0.66 0.71793
Target:  5'- -gGGCCGACgCGcGG-GCGGCC-UCGCg -3'
miRNA:   3'- ugCCGGUUG-GUcCCgCGCUGGcAGCG- -5'
31043 3' -61.3 NC_006560.1 + 57666 0.66 0.71793
Target:  5'- cCGGgCGGCgA-GGCGCGcCCGcCGCg -3'
miRNA:   3'- uGCCgGUUGgUcCCGCGCuGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 71726 0.66 0.71793
Target:  5'- cUGGaguaCCcgUCGGGGCGCGGCCuG-CGCu -3'
miRNA:   3'- uGCC----GGuuGGUCCCGCGCUGG-CaGCG- -5'
31043 3' -61.3 NC_006560.1 + 66724 0.66 0.70837
Target:  5'- uGCuGCCgGGCCAGGGcCGgGAa-GUCGCc -3'
miRNA:   3'- -UGcCGG-UUGGUCCC-GCgCUggCAGCG- -5'
31043 3' -61.3 NC_006560.1 + 126374 0.66 0.70837
Target:  5'- -gGGCuCGACgGGGGCGCcGcccgggucuccGCCG-CGCg -3'
miRNA:   3'- ugCCG-GUUGgUCCCGCG-C-----------UGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 17965 0.66 0.70837
Target:  5'- cGCGGCgGcgcCCGGGGCcccacccgcGCGAgCGggCGCg -3'
miRNA:   3'- -UGCCGgUu--GGUCCCG---------CGCUgGCa-GCG- -5'
31043 3' -61.3 NC_006560.1 + 22687 0.66 0.70837
Target:  5'- cGCGcGCCGccgugGCC-GGGCGCGACgccaCGggcCGCu -3'
miRNA:   3'- -UGC-CGGU-----UGGuCCCGCGCUG----GCa--GCG- -5'
31043 3' -61.3 NC_006560.1 + 26785 0.66 0.70837
Target:  5'- cGCGGCgCGgaggaGCCGGGGagaGCGAgaCCGacggggCGCg -3'
miRNA:   3'- -UGCCG-GU-----UGGUCCCg--CGCU--GGCa-----GCG- -5'
31043 3' -61.3 NC_006560.1 + 66905 0.66 0.70837
Target:  5'- cGCGGCguGCUc-GGCGCcGCCGUCcGCn -3'
miRNA:   3'- -UGCCGguUGGucCCGCGcUGGCAG-CG- -5'
31043 3' -61.3 NC_006560.1 + 109487 0.66 0.70837
Target:  5'- gGCGGCUAuuaaGGGGC-CGugUGUgGCg -3'
miRNA:   3'- -UGCCGGUugg-UCCCGcGCugGCAgCG- -5'
31043 3' -61.3 NC_006560.1 + 121822 0.66 0.70837
Target:  5'- cCGGCCGaacaucgcggaGgCGGGGCGCGcGCC--CGCg -3'
miRNA:   3'- uGCCGGU-----------UgGUCCCGCGC-UGGcaGCG- -5'
31043 3' -61.3 NC_006560.1 + 131046 0.66 0.70837
Target:  5'- cUGGCCGAcgcugaaggucCCGgcGGGCGCcGCCGcCGUg -3'
miRNA:   3'- uGCCGGUU-----------GGU--CCCGCGcUGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 147939 0.66 0.70837
Target:  5'- cGCGGCCc-CCGGgaGGCGgGcCCGggcUCGCa -3'
miRNA:   3'- -UGCCGGuuGGUC--CCGCgCuGGC---AGCG- -5'
31043 3' -61.3 NC_006560.1 + 107983 0.66 0.70837
Target:  5'- gGCGGC--GCCGGGaCGuCGGCCGggucgUCGCc -3'
miRNA:   3'- -UGCCGguUGGUCCcGC-GCUGGC-----AGCG- -5'
31043 3' -61.3 NC_006560.1 + 42688 0.66 0.70837
Target:  5'- cACGGgCAGCgGGGucuGCGUccGGCCGucUCGCg -3'
miRNA:   3'- -UGCCgGUUGgUCC---CGCG--CUGGC--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.