miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31043 3' -61.3 NC_006560.1 + 118 0.74 0.270876
Target:  5'- cGCGGCCGGCgCGgguuuGGGCGgGGCCGgcccCGCc -3'
miRNA:   3'- -UGCCGGUUG-GU-----CCCGCgCUGGCa---GCG- -5'
31043 3' -61.3 NC_006560.1 + 452 0.67 0.650037
Target:  5'- cGCGGCCuccCCGGcGG-GCGGCCaGUCa- -3'
miRNA:   3'- -UGCCGGuu-GGUC-CCgCGCUGG-CAGcg -5'
31043 3' -61.3 NC_006560.1 + 516 0.69 0.49592
Target:  5'- cACGGgC-GCCggGGGGCgGCGGCCGgccgCGCc -3'
miRNA:   3'- -UGCCgGuUGG--UCCCG-CGCUGGCa---GCG- -5'
31043 3' -61.3 NC_006560.1 + 670 0.7 0.477648
Target:  5'- cCGGCgCGcCCGcGGCGCGGgcUCGUCGCg -3'
miRNA:   3'- uGCCG-GUuGGUcCCGCGCU--GGCAGCG- -5'
31043 3' -61.3 NC_006560.1 + 971 0.7 0.459715
Target:  5'- -aGGCCugcacGCCcgGGGGCGCGcCCcUCGCc -3'
miRNA:   3'- ugCCGGu----UGG--UCCCGCGCuGGcAGCG- -5'
31043 3' -61.3 NC_006560.1 + 1144 0.69 0.542882
Target:  5'- cCGGCCu-CCGGGGUuccugGCGGCCGgguucucUGCg -3'
miRNA:   3'- uGCCGGuuGGUCCCG-----CGCUGGCa------GCG- -5'
31043 3' -61.3 NC_006560.1 + 1319 0.71 0.391018
Target:  5'- cACGGCUcccgAGCCcccGGGCGCccgacggGACCGUgCGCg -3'
miRNA:   3'- -UGCCGG----UUGGu--CCCGCG-------CUGGCA-GCG- -5'
31043 3' -61.3 NC_006560.1 + 1495 0.66 0.679365
Target:  5'- cGCGGCCcacGCCggcGGGaGCGCGugCaUCGg -3'
miRNA:   3'- -UGCCGGu--UGG---UCC-CGCGCugGcAGCg -5'
31043 3' -61.3 NC_006560.1 + 1526 0.66 0.689079
Target:  5'- -gGGCC--CCGGGcGCGCGcCCGgccaCGCc -3'
miRNA:   3'- ugCCGGuuGGUCC-CGCGCuGGCa---GCG- -5'
31043 3' -61.3 NC_006560.1 + 1995 0.71 0.416521
Target:  5'- -gGGCCAGcuCCAGGGCGgCGGCguccucggCGUCGg -3'
miRNA:   3'- ugCCGGUU--GGUCCCGC-GCUG--------GCAGCg -5'
31043 3' -61.3 NC_006560.1 + 2136 0.67 0.620591
Target:  5'- cCGGCuCGGgCAGGGCGCG--CG-CGCa -3'
miRNA:   3'- uGCCG-GUUgGUCCCGCGCugGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 2173 0.7 0.454405
Target:  5'- cGCGGCgGGCaGGGccucgggcccggcgcGCGCGGCCG-CGCg -3'
miRNA:   3'- -UGCCGgUUGgUCC---------------CGCGCUGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 2292 0.66 0.689079
Target:  5'- cGCGGCgGAagucGGGCGCGccggcggcgGCCGccUCGCg -3'
miRNA:   3'- -UGCCGgUUggu-CCCGCGC---------UGGC--AGCG- -5'
31043 3' -61.3 NC_006560.1 + 2332 0.78 0.16106
Target:  5'- cGCGGgCGAgUCGGcGGCGCGGCCGUCGa -3'
miRNA:   3'- -UGCCgGUU-GGUC-CCGCGCUGGCAGCg -5'
31043 3' -61.3 NC_006560.1 + 2362 0.68 0.600989
Target:  5'- cGCGGgCAGCac-GGCGCGGCgGuacUCGCg -3'
miRNA:   3'- -UGCCgGUUGgucCCGCGCUGgC---AGCG- -5'
31043 3' -61.3 NC_006560.1 + 2457 0.66 0.679365
Target:  5'- cGCGGcCCAGgCGcGGCgGCGGCgCGUCGg -3'
miRNA:   3'- -UGCC-GGUUgGUcCCG-CGCUG-GCAGCg -5'
31043 3' -61.3 NC_006560.1 + 2541 0.71 0.383807
Target:  5'- cGCGGCCGgagGCgAGcacGGCGCGGCgcagGUCGCg -3'
miRNA:   3'- -UGCCGGU---UGgUC---CCGCGCUGg---CAGCG- -5'
31043 3' -61.3 NC_006560.1 + 2578 0.67 0.610782
Target:  5'- cGCGGCgGGCCAGcGGaCGuCGcACUG-CGCg -3'
miRNA:   3'- -UGCCGgUUGGUC-CC-GC-GC-UGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 2868 0.67 0.606863
Target:  5'- gGCGGUUGGCCAGcgcGGCGagcaggaaggagaGGCCGcCGCg -3'
miRNA:   3'- -UGCCGGUUGGUC---CCGCg------------CUGGCaGCG- -5'
31043 3' -61.3 NC_006560.1 + 3058 0.75 0.225219
Target:  5'- aGCGGCC--CgAGGGCGCGGCCGgaGCc -3'
miRNA:   3'- -UGCCGGuuGgUCCCGCGCUGGCagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.