miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31043 5' -57.1 NC_006560.1 + 80824 0.66 0.871987
Target:  5'- gGGCGGGgCGCGcCcGgAACCGCGcCu -3'
miRNA:   3'- aCCGCCUgGCGUaGaCgUUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 64102 0.66 0.871987
Target:  5'- gGaGUGGGCCGUgcggGUCUGCGgguucACCAgGUa -3'
miRNA:   3'- aC-CGCCUGGCG----UAGACGU-----UGGUgCAg -5'
31043 5' -57.1 NC_006560.1 + 33636 0.66 0.871987
Target:  5'- gGGCGGggggcGCCGgGg--GCGGCCGCGg- -3'
miRNA:   3'- aCCGCC-----UGGCgUagaCGUUGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 121839 0.66 0.871987
Target:  5'- aGGCGGGgCGC----GCGcCCGCGUCc -3'
miRNA:   3'- aCCGCCUgGCGuagaCGUuGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 42063 0.66 0.871987
Target:  5'- aGGCGGccuCCGCGggcgggggcUCgUGCAG-CGCGUCc -3'
miRNA:   3'- aCCGCCu--GGCGU---------AG-ACGUUgGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 90992 0.66 0.869784
Target:  5'- cGGCGGggugaucgucgGCCGCcaggagcuggacgugCUGCG-CUACGUCg -3'
miRNA:   3'- aCCGCC-----------UGGCGua-------------GACGUuGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 130327 0.66 0.864569
Target:  5'- gGcGCGGGCCGCGgcgUCccccGCcGCCGCGcCg -3'
miRNA:   3'- aC-CGCCUGGCGU---AGa---CGuUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 111435 0.66 0.864569
Target:  5'- aGGCGGgccACCGCcgCgagGCGAUCgagGCGUg -3'
miRNA:   3'- aCCGCC---UGGCGuaGa--CGUUGG---UGCAg -5'
31043 5' -57.1 NC_006560.1 + 9608 0.66 0.864569
Target:  5'- aGcGCGGGgCGCGgcccCUGgGGCCGCGcCg -3'
miRNA:   3'- aC-CGCCUgGCGUa---GACgUUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 3938 0.66 0.864569
Target:  5'- gGGCGGcGCCGCGgUCggcggcgaggGCGGCCGCc-- -3'
miRNA:   3'- aCCGCC-UGGCGU-AGa---------CGUUGGUGcag -5'
31043 5' -57.1 NC_006560.1 + 1990 0.66 0.864569
Target:  5'- gGGcCGGGCCaGC-UCcaggGCGGCgGCGUCc -3'
miRNA:   3'- aCC-GCCUGG-CGuAGa---CGUUGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 18837 0.66 0.864569
Target:  5'- gGGCGGcuCCGCGa----GGCCGCGUCu -3'
miRNA:   3'- aCCGCCu-GGCGUagacgUUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 25170 0.66 0.864569
Target:  5'- cUGGCgcuGGACCGC----GCGGCCGCG-Cg -3'
miRNA:   3'- -ACCG---CCUGGCGuagaCGUUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 40835 0.66 0.864569
Target:  5'- aGGCaguuGACCGCcUCgUGCAcgACCACGa- -3'
miRNA:   3'- aCCGc---CUGGCGuAG-ACGU--UGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 60062 0.66 0.864569
Target:  5'- gGGUGGACUGCAcCgagGCcGCCGUGUUc -3'
miRNA:   3'- aCCGCCUGGCGUaGa--CGuUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 70449 0.66 0.864569
Target:  5'- cUGGCGGGCCuGCGggCcGCGAUCGCc-- -3'
miRNA:   3'- -ACCGCCUGG-CGUa-GaCGUUGGUGcag -5'
31043 5' -57.1 NC_006560.1 + 107999 0.66 0.864569
Target:  5'- cGGcCGGgucgucGCCGCG-CUGCGccGCCGCGa- -3'
miRNA:   3'- aCC-GCC------UGGCGUaGACGU--UGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 93684 0.66 0.864569
Target:  5'- cGGCGGacgacGCCGCGgUCUcggaGCcGACCGCGg- -3'
miRNA:   3'- aCCGCC-----UGGCGU-AGA----CG-UUGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 136243 0.66 0.860018
Target:  5'- cGGcCGGGCUGCgacccgugcugGUCUGCguGggcucgcccacgcagACCGCGUCg -3'
miRNA:   3'- aCC-GCCUGGCG-----------UAGACG--U---------------UGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 4643 0.66 0.860018
Target:  5'- gGGCacGGGCCGCGgccgcGCGGCCgugaagcggcccgugGCGUCg -3'
miRNA:   3'- aCCG--CCUGGCGUaga--CGUUGG---------------UGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.