miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31043 5' -57.1 NC_006560.1 + 94348 1.1 0.001818
Target:  5'- cUGGCGGACCGCAUCUGCAACCACGUCa -3'
miRNA:   3'- -ACCGCCUGGCGUAGACGUUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3337 0.77 0.273487
Target:  5'- gGGCGGGCgGCGUCgGCGuCgGCGUCg -3'
miRNA:   3'- aCCGCCUGgCGUAGaCGUuGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 146088 0.77 0.279997
Target:  5'- cGGCGGGCC-CA-CUGCGgcuCCGCGUCg -3'
miRNA:   3'- aCCGCCUGGcGUaGACGUu--GGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 26295 0.76 0.321651
Target:  5'- cUGGCGGGCgGCuUCUGCcccgucggcGGCCGCGUa -3'
miRNA:   3'- -ACCGCCUGgCGuAGACG---------UUGGUGCAg -5'
31043 5' -57.1 NC_006560.1 + 25139 0.75 0.359774
Target:  5'- gGGCcugGGugCGCcgCUGCGGCC-CGUCu -3'
miRNA:   3'- aCCG---CCugGCGuaGACGUUGGuGCAG- -5'
31043 5' -57.1 NC_006560.1 + 39058 0.75 0.384117
Target:  5'- gGGUGGugcaucGCCGCGgcgCUGCGGCCgaACGUCu -3'
miRNA:   3'- aCCGCC------UGGCGUa--GACGUUGG--UGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3090 0.74 0.39247
Target:  5'- gGGCGGGCCGCAgcgcGCGGCCAgCGa- -3'
miRNA:   3'- aCCGCCUGGCGUaga-CGUUGGU-GCag -5'
31043 5' -57.1 NC_006560.1 + 51241 0.74 0.39247
Target:  5'- cGGUGGGCgCGCGcCUGCAcCCGCGcUCg -3'
miRNA:   3'- aCCGCCUG-GCGUaGACGUuGGUGC-AG- -5'
31043 5' -57.1 NC_006560.1 + 42567 0.74 0.400941
Target:  5'- aGGCGc-CCGCcgCgGCGGCCACGUCc -3'
miRNA:   3'- aCCGCcuGGCGuaGaCGUUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 85929 0.74 0.409527
Target:  5'- cGGCGG-CCGCcgCcGaGACCGCGUCg -3'
miRNA:   3'- aCCGCCuGGCGuaGaCgUUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 35239 0.74 0.409527
Target:  5'- cGGCGGccgccGCCGCAcCUGCGggGCCGCG-Cg -3'
miRNA:   3'- aCCGCC-----UGGCGUaGACGU--UGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 42852 0.74 0.427038
Target:  5'- cGGCGGGCCagccgugggGCGUCaGCAGCCGC-UCc -3'
miRNA:   3'- aCCGCCUGG---------CGUAGaCGUUGGUGcAG- -5'
31043 5' -57.1 NC_006560.1 + 101760 0.74 0.427038
Target:  5'- cGGCGG-CCGCGUC-GCGgGgCACGUCg -3'
miRNA:   3'- aCCGCCuGGCGUAGaCGU-UgGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 47444 0.73 0.444985
Target:  5'- cGGCcguGGGCCGCGUg-GCGGCCACG-Ca -3'
miRNA:   3'- aCCG---CCUGGCGUAgaCGUUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 5175 0.73 0.463347
Target:  5'- gGGCGGGCCGCggCgacgGCGGCCcCGa- -3'
miRNA:   3'- aCCGCCUGGCGuaGa---CGUUGGuGCag -5'
31043 5' -57.1 NC_006560.1 + 48894 0.73 0.463347
Target:  5'- cGGCGcGCCGCGcgagCU-CAACCACGUCc -3'
miRNA:   3'- aCCGCcUGGCGUa---GAcGUUGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 42495 0.73 0.472676
Target:  5'- gGGCGGucacgggguuCCGCGcgUGCAcgcGCCACGUCa -3'
miRNA:   3'- aCCGCCu---------GGCGUagACGU---UGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 118151 0.73 0.482098
Target:  5'- cGGCGGACCGCGaggacgUCU-CGAUCACG-Cg -3'
miRNA:   3'- aCCGCCUGGCGU------AGAcGUUGGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 58387 0.73 0.49161
Target:  5'- cGGCGc-CCGCGUCgGCGcccccggggGCCGCGUCg -3'
miRNA:   3'- aCCGCcuGGCGUAGaCGU---------UGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 57331 0.72 0.501209
Target:  5'- cGGCGGugCGCGgg-GCAgGCCGCGg- -3'
miRNA:   3'- aCCGCCugGCGUagaCGU-UGGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.