miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31043 5' -57.1 NC_006560.1 + 1160 0.67 0.815904
Target:  5'- cUGGCGG-CCGgGuucUCUGCgGACCGC-UCg -3'
miRNA:   3'- -ACCGCCuGGCgU---AGACG-UUGGUGcAG- -5'
31043 5' -57.1 NC_006560.1 + 1990 0.66 0.864569
Target:  5'- gGGcCGGGCCaGC-UCcaggGCGGCgGCGUCc -3'
miRNA:   3'- aCC-GCCUGG-CGuAGa---CGUUGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 2423 0.67 0.807166
Target:  5'- aGGCGcGugCGCAcgCgGUAGCgCACGUUg -3'
miRNA:   3'- aCCGC-CugGCGUa-GaCGUUG-GUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3090 0.74 0.39247
Target:  5'- gGGCGGGCCGCAgcgcGCGGCCAgCGa- -3'
miRNA:   3'- aCCGCCUGGCGUaga-CGUUGGU-GCag -5'
31043 5' -57.1 NC_006560.1 + 3337 0.77 0.273487
Target:  5'- gGGCGGGCgGCGUCgGCGuCgGCGUCg -3'
miRNA:   3'- aCCGCCUGgCGUAGaCGUuGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3421 0.66 0.841088
Target:  5'- gGGCGGGCgGCGggcgCggGCGcCCGCGg- -3'
miRNA:   3'- aCCGCCUGgCGUa---Ga-CGUuGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 3477 0.71 0.570401
Target:  5'- cGcGCGGGCgGCGUCgGCGuCgGCGUCg -3'
miRNA:   3'- aC-CGCCUGgCGUAGaCGUuGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3764 0.69 0.712531
Target:  5'- cGGCGGcGCCGCG-CgGCGggACCGCGg- -3'
miRNA:   3'- aCCGCC-UGGCGUaGaCGU--UGGUGCag -5'
31043 5' -57.1 NC_006560.1 + 3865 0.7 0.651882
Target:  5'- cGGCaGACCGCcaggcacUCcGCGGCgGCGUCg -3'
miRNA:   3'- aCCGcCUGGCGu------AGaCGUUGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 3938 0.66 0.864569
Target:  5'- gGGCGGcGCCGCGgUCggcggcgaggGCGGCCGCc-- -3'
miRNA:   3'- aCCGCC-UGGCGU-AGa---------CGUUGGUGcag -5'
31043 5' -57.1 NC_006560.1 + 4012 0.69 0.722453
Target:  5'- cGGCGaGGCCGgGggcgGCGGCgGCGUCc -3'
miRNA:   3'- aCCGC-CUGGCgUaga-CGUUGgUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 4643 0.66 0.860018
Target:  5'- gGGCacGGGCCGCGgccgcGCGGCCgugaagcggcccgugGCGUCg -3'
miRNA:   3'- aCCG--CCUGGCGUaga--CGUUGG---------------UGCAG- -5'
31043 5' -57.1 NC_006560.1 + 4753 0.69 0.722453
Target:  5'- cGGCGGcCCGCGgcgGCGGCgGCG-Cg -3'
miRNA:   3'- aCCGCCuGGCGUagaCGUUGgUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 4879 0.69 0.702542
Target:  5'- cGGCGGcgGCgGCGcCgGCGgggGCCGCGUCg -3'
miRNA:   3'- aCCGCC--UGgCGUaGaCGU---UGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 5175 0.73 0.463347
Target:  5'- gGGCGGGCCGCggCgacgGCGGCCcCGa- -3'
miRNA:   3'- aCCGCCUGGCGuaGa---CGUUGGuGCag -5'
31043 5' -57.1 NC_006560.1 + 5353 0.7 0.611018
Target:  5'- cGGCGGGCCGuCGUCcggguccgGCGAgcCCGCGcCg -3'
miRNA:   3'- aCCGCCUGGC-GUAGa-------CGUU--GGUGCaG- -5'
31043 5' -57.1 NC_006560.1 + 7439 0.71 0.570401
Target:  5'- -cGCGGACCGCcgCgGaccCCACGUCg -3'
miRNA:   3'- acCGCCUGGCGuaGaCguuGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 7919 0.67 0.807166
Target:  5'- cUGGCGGACgGCGgccgugaacuUCgugGCGGcgcuggcgccCCGCGUCc -3'
miRNA:   3'- -ACCGCCUGgCGU----------AGa--CGUU----------GGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 8158 0.66 0.856943
Target:  5'- uUGGC--ACCGCAUCUu---CCGCGUCu -3'
miRNA:   3'- -ACCGccUGGCGUAGAcguuGGUGCAG- -5'
31043 5' -57.1 NC_006560.1 + 8661 0.7 0.651882
Target:  5'- cGGCGGcCCGCGUUcgccgGCGGCgGCGcCu -3'
miRNA:   3'- aCCGCCuGGCGUAGa----CGUUGgUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.