miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31044 3' -66.6 NC_006560.1 + 112852 0.66 0.385108
Target:  5'- -cGCUCCCGGGg-CCcgagcucggcggccaGGCgCAGCCCGAg -3'
miRNA:   3'- uuCGGGGGCCCgaGG---------------UCG-GUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 109389 0.66 0.381911
Target:  5'- gGGGCCaCCCGGGUUCCGGagcGCUCc- -3'
miRNA:   3'- -UUCGG-GGGCCCGAGGUCgguCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 52233 0.66 0.381911
Target:  5'- cGAGCUgCCuGGCcCCGGCCGGCgCGg -3'
miRNA:   3'- -UUCGGgGGcCCGaGGUCGGUCGgGUu -5'
31044 3' -66.6 NC_006560.1 + 35809 0.66 0.37715
Target:  5'- -cGCCCCCGGGUugauuguuauggcucUCCGGCCAaCUUu- -3'
miRNA:   3'- uuCGGGGGCCCG---------------AGGUCGGUcGGGuu -5'
31044 3' -66.6 NC_006560.1 + 52940 0.66 0.373998
Target:  5'- uGGaCCCCaCGGGCcgCCGGugcgcggccCCGGCCCGc -3'
miRNA:   3'- uUC-GGGG-GCCCGa-GGUC---------GGUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 125858 0.66 0.373998
Target:  5'- cAGCCCCCGcGC-CCcGCgGGCCCc- -3'
miRNA:   3'- uUCGGGGGCcCGaGGuCGgUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 10302 0.66 0.373998
Target:  5'- cGGGCCgCCGGGgaCCGccGCCgcgacccgcGGCCCGAc -3'
miRNA:   3'- -UUCGGgGGCCCgaGGU--CGG---------UCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 56084 0.66 0.373998
Target:  5'- -cGCCCCgGGGC-CC-GCCcccuccGCCCAGc -3'
miRNA:   3'- uuCGGGGgCCCGaGGuCGGu-----CGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 58249 0.66 0.373998
Target:  5'- gGGGCCgCCGaGGCgagCC-GCCGGCCUc- -3'
miRNA:   3'- -UUCGGgGGC-CCGa--GGuCGGUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 96103 0.66 0.373998
Target:  5'- -cGCCCCCGcGGCggCGGC-GGCCCc- -3'
miRNA:   3'- uuCGGGGGC-CCGagGUCGgUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 117475 0.66 0.373998
Target:  5'- cGAGCCCgggcguCCGGGCUC--GCUGGUCCAc -3'
miRNA:   3'- -UUCGGG------GGCCCGAGguCGGUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 123299 0.66 0.373998
Target:  5'- -cGCCCCgGGGUUCCGGgacgcuggaCAuGCCCGc -3'
miRNA:   3'- uuCGGGGgCCCGAGGUCg--------GU-CGGGUu -5'
31044 3' -66.6 NC_006560.1 + 26443 0.66 0.366196
Target:  5'- gGGGCUgCCGGGCUCCccuaGGCCuccaccGCCgGGa -3'
miRNA:   3'- -UUCGGgGGCCCGAGG----UCGGu-----CGGgUU- -5'
31044 3' -66.6 NC_006560.1 + 29356 0.66 0.366196
Target:  5'- gGAGCCCCgGGucGCUCCu-CC-GCCCAGg -3'
miRNA:   3'- -UUCGGGGgCC--CGAGGucGGuCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 123439 0.66 0.366196
Target:  5'- cGGCCCCUGGGCcacgacUgCGGCCuGGCCg-- -3'
miRNA:   3'- uUCGGGGGCCCG------AgGUCGG-UCGGguu -5'
31044 3' -66.6 NC_006560.1 + 140808 0.66 0.366196
Target:  5'- uAGGCCCgCUGGGC-CguGCCGuCCCAc -3'
miRNA:   3'- -UUCGGG-GGCCCGaGguCGGUcGGGUu -5'
31044 3' -66.6 NC_006560.1 + 30752 0.66 0.365422
Target:  5'- cGGCCCCC-GGC-CCugacgcaGGCCcaGGCCCAGa -3'
miRNA:   3'- uUCGGGGGcCCGaGG-------UCGG--UCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 40303 0.66 0.365422
Target:  5'- cAGCCCCCcgcgcuuGGGCgggCgCGGCCccuucuccGGCCCGGg -3'
miRNA:   3'- uUCGGGGG-------CCCGa--G-GUCGG--------UCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 32389 0.66 0.364649
Target:  5'- aGGGCCCCCcgcggGGGCggagggugggggCCgaGGCCcGCCCAGg -3'
miRNA:   3'- -UUCGGGGG-----CCCGa-----------GG--UCGGuCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 60825 0.66 0.358507
Target:  5'- gGAGCCCCgCGGGCgaUCCccCCccaaGGCCCGc -3'
miRNA:   3'- -UUCGGGG-GCCCG--AGGucGG----UCGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.