miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31044 3' -66.6 NC_006560.1 + 92062 1.03 0.000642
Target:  5'- cAAGCCCCCGGGCUCCAGCCAGCCCAAc -3'
miRNA:   3'- -UUCGGGGGCCCGAGGUCGGUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 39782 0.81 0.031609
Target:  5'- cGAGCgaCCCGGGCUCCgaggaGGCCGGCCCGGg -3'
miRNA:   3'- -UUCGg-GGGCCCGAGG-----UCGGUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 24302 0.79 0.043336
Target:  5'- -cGCCCgagCCGGGCUCCGGCCGcGCCCu- -3'
miRNA:   3'- uuCGGG---GGCCCGAGGUCGGU-CGGGuu -5'
31044 3' -66.6 NC_006560.1 + 60276 0.78 0.053416
Target:  5'- -cGCCCCCGGGC-CCGGCgccaAGCCCGc -3'
miRNA:   3'- uuCGGGGGCCCGaGGUCGg---UCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 68574 0.78 0.054827
Target:  5'- -cGCCCCCGGcGuCUCCcaucccgcugGGCCAGCCCAGc -3'
miRNA:   3'- uuCGGGGGCC-C-GAGG----------UCGGUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 112406 0.76 0.072923
Target:  5'- cGGGCCCCCGGGCcCCccccGCCgGGCCCGg -3'
miRNA:   3'- -UUCGGGGGCCCGaGGu---CGG-UCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 88453 0.75 0.091873
Target:  5'- -cGCCCgCGGGCgcgcggUCCAcGCCGGCCCAc -3'
miRNA:   3'- uuCGGGgGCCCG------AGGU-CGGUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 22217 0.74 0.094247
Target:  5'- -cGCCCCCGcGGCcCCGGCCcgGGCCCc- -3'
miRNA:   3'- uuCGGGGGC-CCGaGGUCGG--UCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 66242 0.74 0.096679
Target:  5'- cGGCCCCCGGGCgCCcgaAGCaCAGCUCGg -3'
miRNA:   3'- uUCGGGGGCCCGaGG---UCG-GUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 140352 0.74 0.101722
Target:  5'- cAGCCCCgCGGGCgucggCgCGGCgCGGCCCGAg -3'
miRNA:   3'- uUCGGGG-GCCCGa----G-GUCG-GUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 79518 0.73 0.121387
Target:  5'- cGGCCCaCCGucGGCUCCcucGCCAGCCUAGc -3'
miRNA:   3'- uUCGGG-GGC--CCGAGGu--CGGUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 21719 0.73 0.127625
Target:  5'- -cGCCCCgGGGCggagCCGGCCGggcgccGCCCGu -3'
miRNA:   3'- uuCGGGGgCCCGa---GGUCGGU------CGGGUu -5'
31044 3' -66.6 NC_006560.1 + 145005 0.72 0.134159
Target:  5'- -cGCCCUCGGGCggagcccCCGGCCccGGCCCu- -3'
miRNA:   3'- uuCGGGGGCCCGa------GGUCGG--UCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 34958 0.72 0.140999
Target:  5'- gGGGCCCgggcgCCGGGCUCC-GCCgGGCCCc- -3'
miRNA:   3'- -UUCGGG-----GGCCCGAGGuCGG-UCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 100583 0.72 0.142405
Target:  5'- aGGGCCCCCGGGggUCGGCCAccacggccagcacgcGCCCc- -3'
miRNA:   3'- -UUCGGGGGCCCgaGGUCGGU---------------CGGGuu -5'
31044 3' -66.6 NC_006560.1 + 78105 0.72 0.144538
Target:  5'- cGGCCCCCGGGCgcugguggcggUCAGCguGCUCGg -3'
miRNA:   3'- uUCGGGGGCCCGa----------GGUCGguCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 147941 0.72 0.144538
Target:  5'- cGGCCCCCGGGa---GGCgGGCCCGGg -3'
miRNA:   3'- uUCGGGGGCCCgaggUCGgUCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 71075 0.72 0.147792
Target:  5'- -cGCgCCUCGGcGCUCCGGCCcuuccccGGCCCGGa -3'
miRNA:   3'- uuCG-GGGGCC-CGAGGUCGG-------UCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 131603 0.71 0.155645
Target:  5'- uGGaCCCCCaGGGCgCC-GCCGGCCCGg -3'
miRNA:   3'- uUC-GGGGG-CCCGaGGuCGGUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 72701 0.71 0.158346
Target:  5'- cGGCCCCCGccccGGUUCCGgucccggccacgacGCCAGCCCc- -3'
miRNA:   3'- uUCGGGGGC----CCGAGGU--------------CGGUCGGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.