miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31044 3' -66.6 NC_006560.1 + 60825 0.66 0.358507
Target:  5'- gGAGCCCCgCGGGCgaUCCccCCccaaGGCCCGc -3'
miRNA:   3'- -UUCGGGG-GCCCG--AGGucGG----UCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 69893 0.66 0.358507
Target:  5'- -cGCCCUgCGGGUgCUGGCCugGGCCCGGg -3'
miRNA:   3'- uuCGGGG-GCCCGaGGUCGG--UCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 125508 0.66 0.350932
Target:  5'- -cGCCCCCGc-CUCCGcGCCGGCCgCGGu -3'
miRNA:   3'- uuCGGGGGCccGAGGU-CGGUCGG-GUU- -5'
31044 3' -66.6 NC_006560.1 + 52632 0.66 0.350932
Target:  5'- aGAGCCCgCCGGGCgagggcgaccCCAGCC--UCCAGg -3'
miRNA:   3'- -UUCGGG-GGCCCGa---------GGUCGGucGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 50208 0.66 0.350932
Target:  5'- -cGCCCCCGGGCggCGGCgGcgcgcguccGCCCc- -3'
miRNA:   3'- uuCGGGGGCCCGagGUCGgU---------CGGGuu -5'
31044 3' -66.6 NC_006560.1 + 72085 0.66 0.350932
Target:  5'- uGGGgCCCCGagccGGCgaccCCGGCCGGCCUc- -3'
miRNA:   3'- -UUCgGGGGC----CCGa---GGUCGGUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 1145 0.66 0.350932
Target:  5'- cGGCCUCCgGGGUUCCuGgCGGCCgGGu -3'
miRNA:   3'- uUCGGGGG-CCCGAGGuCgGUCGGgUU- -5'
31044 3' -66.6 NC_006560.1 + 26069 0.66 0.343471
Target:  5'- gGAGCCgUgCGGGCggaacCCGGgCGGCCCGg -3'
miRNA:   3'- -UUCGG-GgGCCCGa----GGUCgGUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 3060 0.66 0.343471
Target:  5'- cGGCCCgaGGGCg-CGGCCggAGCCCGg -3'
miRNA:   3'- uUCGGGggCCCGagGUCGG--UCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 125541 0.66 0.343471
Target:  5'- -cGCCgCCgGGGCgUCCAuCCuGCCCGAc -3'
miRNA:   3'- uuCGG-GGgCCCG-AGGUcGGuCGGGUU- -5'
31044 3' -66.6 NC_006560.1 + 143185 0.66 0.343471
Target:  5'- -uGCCCCCGcGcGCcCCGuGCCGGCCUc- -3'
miRNA:   3'- uuCGGGGGC-C-CGaGGU-CGGUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 52113 0.66 0.343471
Target:  5'- -cGCCCgCGGauauaaggcGCUCCggcgGGCCGGCCCc- -3'
miRNA:   3'- uuCGGGgGCC---------CGAGG----UCGGUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 150066 0.66 0.343471
Target:  5'- -cGCgCCCCGcGC-CCGGCCGcGCCCGc -3'
miRNA:   3'- uuCG-GGGGCcCGaGGUCGGU-CGGGUu -5'
31044 3' -66.6 NC_006560.1 + 141549 0.66 0.336125
Target:  5'- cGGUCCgCGGGagaacgCCGGCgGGCCCGg -3'
miRNA:   3'- uUCGGGgGCCCga----GGUCGgUCGGGUu -5'
31044 3' -66.6 NC_006560.1 + 57879 0.66 0.336125
Target:  5'- gGGGCCCCCcgcGGGUcuuccgcgUCCAccGCCGcGCCCGg -3'
miRNA:   3'- -UUCGGGGG---CCCG--------AGGU--CGGU-CGGGUu -5'
31044 3' -66.6 NC_006560.1 + 58208 0.66 0.336125
Target:  5'- cGAGagCCCGGGCUCCGGgCUcGCCgGAg -3'
miRNA:   3'- -UUCggGGGCCCGAGGUC-GGuCGGgUU- -5'
31044 3' -66.6 NC_006560.1 + 59343 0.66 0.336125
Target:  5'- cGGGUUCCgGGGC-CCGGUCGGCCg-- -3'
miRNA:   3'- -UUCGGGGgCCCGaGGUCGGUCGGguu -5'
31044 3' -66.6 NC_006560.1 + 106593 0.66 0.336125
Target:  5'- uGGCCgCCCcGGUcgUCCGGCgGGCCCu- -3'
miRNA:   3'- uUCGG-GGGcCCG--AGGUCGgUCGGGuu -5'
31044 3' -66.6 NC_006560.1 + 79003 0.66 0.336125
Target:  5'- -cGCCCCCGacGCccucCCGGCCGGCgCCGg -3'
miRNA:   3'- uuCGGGGGCc-CGa---GGUCGGUCG-GGUu -5'
31044 3' -66.6 NC_006560.1 + 74619 0.67 0.328895
Target:  5'- cGGaCCuCCCGGGCggguggaCCuGCCuGCCCGAc -3'
miRNA:   3'- uUC-GG-GGGCCCGa------GGuCGGuCGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.