miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31044 5' -59.1 NC_006560.1 + 129585 0.66 0.744776
Target:  5'- cUCUcGGAggaGGCGgUGCGGCGCGugacggacGCCc -3'
miRNA:   3'- aAGA-CCUg--CCGCgACGUCGCGU--------UGGu -5'
31044 5' -59.1 NC_006560.1 + 25839 0.66 0.744776
Target:  5'- ---gGGACGGCGUgGCcgGGCGCGcGCCc -3'
miRNA:   3'- aagaCCUGCCGCGaCG--UCGCGU-UGGu -5'
31044 5' -59.1 NC_006560.1 + 102513 0.66 0.744776
Target:  5'- -cUUGaGGCGGCGCUcgaucuccaccgGCAGCucgGCGGCCu -3'
miRNA:   3'- aaGAC-CUGCCGCGA------------CGUCG---CGUUGGu -5'
31044 5' -59.1 NC_006560.1 + 58847 0.66 0.744776
Target:  5'- gUCgGGGCGGCcCUGgGGCaGCAGCaCGa -3'
miRNA:   3'- aAGaCCUGCCGcGACgUCG-CGUUG-GU- -5'
31044 5' -59.1 NC_006560.1 + 48981 0.66 0.735017
Target:  5'- -gCUGacGGCGGCGCccgcgcUGCAGaCGCAGCa- -3'
miRNA:   3'- aaGAC--CUGCCGCG------ACGUC-GCGUUGgu -5'
31044 5' -59.1 NC_006560.1 + 67074 0.66 0.735017
Target:  5'- ---aGGGCGGgGCUGCc-CGCGgcGCCAg -3'
miRNA:   3'- aagaCCUGCCgCGACGucGCGU--UGGU- -5'
31044 5' -59.1 NC_006560.1 + 32897 0.66 0.735017
Target:  5'- ---gGGGgGGCGCgcccGCGGgGUAGCCGc -3'
miRNA:   3'- aagaCCUgCCGCGa---CGUCgCGUUGGU- -5'
31044 5' -59.1 NC_006560.1 + 94456 0.66 0.735017
Target:  5'- ---cGGGCGcgcGCGCUGCGcGUGCugGACCAg -3'
miRNA:   3'- aagaCCUGC---CGCGACGU-CGCG--UUGGU- -5'
31044 5' -59.1 NC_006560.1 + 142086 0.66 0.735017
Target:  5'- ---cGGGCGGgGCcGCGGCGCGGa-- -3'
miRNA:   3'- aagaCCUGCCgCGaCGUCGCGUUggu -5'
31044 5' -59.1 NC_006560.1 + 5681 0.66 0.725168
Target:  5'- ---gGGGCGGC-CgGCGGCGCcGCCc -3'
miRNA:   3'- aagaCCUGCCGcGaCGUCGCGuUGGu -5'
31044 5' -59.1 NC_006560.1 + 146537 0.66 0.725168
Target:  5'- gUC-GGGgGGCGCggGCAGCGaGGCCc -3'
miRNA:   3'- aAGaCCUgCCGCGa-CGUCGCgUUGGu -5'
31044 5' -59.1 NC_006560.1 + 52938 0.66 0.725168
Target:  5'- -cCUGGACcccacgGGcCGCcGguGCGCGGCCc -3'
miRNA:   3'- aaGACCUG------CC-GCGaCguCGCGUUGGu -5'
31044 5' -59.1 NC_006560.1 + 16531 0.66 0.715238
Target:  5'- -gCUccGCGGCGCUGgGGCGCcgcgcGCCAu -3'
miRNA:   3'- aaGAccUGCCGCGACgUCGCGu----UGGU- -5'
31044 5' -59.1 NC_006560.1 + 68137 0.66 0.715238
Target:  5'- -gCUGu-CGGCcagGCUGC-GCGCGGCCAu -3'
miRNA:   3'- aaGACcuGCCG---CGACGuCGCGUUGGU- -5'
31044 5' -59.1 NC_006560.1 + 64466 0.66 0.715238
Target:  5'- cUCUcGugGGCGC-GCAGCcGCuccACCAg -3'
miRNA:   3'- aAGAcCugCCGCGaCGUCG-CGu--UGGU- -5'
31044 5' -59.1 NC_006560.1 + 85260 0.66 0.715238
Target:  5'- ---cGGAagcCGGCGCUGCGGagGCgGACCGc -3'
miRNA:   3'- aagaCCU---GCCGCGACGUCg-CG-UUGGU- -5'
31044 5' -59.1 NC_006560.1 + 101474 0.66 0.715238
Target:  5'- cUCcGGACGGCGUcGCGGU-CGGCCc -3'
miRNA:   3'- aAGaCCUGCCGCGaCGUCGcGUUGGu -5'
31044 5' -59.1 NC_006560.1 + 130301 0.66 0.715238
Target:  5'- aUCUcGGccgcCGGCGCgguggcgGCGGCGCgGGCCGc -3'
miRNA:   3'- aAGA-CCu---GCCGCGa------CGUCGCG-UUGGU- -5'
31044 5' -59.1 NC_006560.1 + 55210 0.66 0.705238
Target:  5'- cUCUcGAgGGCGCgGCGcGCGCAgacGCCGa -3'
miRNA:   3'- aAGAcCUgCCGCGaCGU-CGCGU---UGGU- -5'
31044 5' -59.1 NC_006560.1 + 45194 0.66 0.705238
Target:  5'- -gCUGGGCGGgGCUuCGGCGUcgAACUc -3'
miRNA:   3'- aaGACCUGCCgCGAcGUCGCG--UUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.