miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31045 3' -58.2 NC_006560.1 + 19583 0.66 0.852013
Target:  5'- nCGGCGCCgcggcccgcucgucgUCGGAGGCaGacuCCAGGguGGCg -3'
miRNA:   3'- gGUUGCGG---------------AGCCUCCGcC---GGUUC--UCG- -5'
31045 3' -58.2 NC_006560.1 + 2181 0.66 0.848918
Target:  5'- gCAGgGCCUCGGGcccggcgcGcGCGGCCGcgcGGuccAGCg -3'
miRNA:   3'- gGUUgCGGAGCCU--------C-CGCCGGU---UC---UCG- -5'
31045 3' -58.2 NC_006560.1 + 3207 0.66 0.848918
Target:  5'- gCAguAgGCCUCGaGGGCGGCgGcggcGGGCg -3'
miRNA:   3'- gGU--UgCGGAGCcUCCGCCGgUu---CUCG- -5'
31045 3' -58.2 NC_006560.1 + 13426 0.66 0.848918
Target:  5'- gUCGGCGCCUCgaGGAGgacgcuGCGG-CAGGcGCg -3'
miRNA:   3'- -GGUUGCGGAG--CCUC------CGCCgGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 31546 0.66 0.848918
Target:  5'- aCgGGCGCCaUCGGGGccuacGUGGuCCucguGGGGCg -3'
miRNA:   3'- -GgUUGCGG-AGCCUC-----CGCC-GGu---UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 39310 0.66 0.848918
Target:  5'- cCCGG-GCCgggCGG-GGCGGU--GGGGCg -3'
miRNA:   3'- -GGUUgCGGa--GCCuCCGCCGguUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 53589 0.66 0.848918
Target:  5'- gCAgcGCGCC-CGGGacgcCGGCCGggAGAGCg -3'
miRNA:   3'- gGU--UGCGGaGCCUcc--GCCGGU--UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 54957 0.66 0.848918
Target:  5'- --cGCGCCggcggCGGGGGaGGCgAcGGGCg -3'
miRNA:   3'- gguUGCGGa----GCCUCCgCCGgUuCUCG- -5'
31045 3' -58.2 NC_006560.1 + 58386 0.66 0.848918
Target:  5'- gCGGCGCCcgCGucGGCGcccCCGGGGGCc -3'
miRNA:   3'- gGUUGCGGa-GCcuCCGCc--GGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 137198 0.66 0.848918
Target:  5'- gCGGC-CC-CGccGGCGGCCgGGGAGCg -3'
miRNA:   3'- gGUUGcGGaGCcuCCGCCGG-UUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 99287 0.66 0.848918
Target:  5'- gCCGGCgGCUggggUCGGGGGaggugguggGGCgCGGGGGCg -3'
miRNA:   3'- -GGUUG-CGG----AGCCUCCg--------CCG-GUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 61594 0.66 0.848918
Target:  5'- aUCGGCGCUgaagCGcacguaguucucGAuGGCGGCCAGG-GCc -3'
miRNA:   3'- -GGUUGCGGa---GC------------CU-CCGCCGGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 21748 0.66 0.848918
Target:  5'- cCCGuCGCCggcCGGgguauaugaggcGGGCGGCCGu--GCg -3'
miRNA:   3'- -GGUuGCGGa--GCC------------UCCGCCGGUucuCG- -5'
31045 3' -58.2 NC_006560.1 + 93558 0.66 0.848918
Target:  5'- aCGGuCGCCgcccgaccggCaGAGGCGGCUgucguucgaGAGGGCg -3'
miRNA:   3'- gGUU-GCGGa---------GcCUCCGCCGG---------UUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 70170 0.66 0.848918
Target:  5'- aUguACGCC-Cu--GGCGGCCcGGGGCg -3'
miRNA:   3'- -GguUGCGGaGccuCCGCCGGuUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 50123 0.66 0.84814
Target:  5'- aCCuGCGguccguCUUUGGGGGCGGCgAcuccgacGGGGCg -3'
miRNA:   3'- -GGuUGC------GGAGCCUCCGCCGgU-------UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 81126 0.66 0.846577
Target:  5'- cCCAGCGCCUgcacgcgcucggggUGGAGGgugucgGGCCGguGGAacuGCg -3'
miRNA:   3'- -GGUUGCGGA--------------GCCUCCg-----CCGGU--UCU---CG- -5'
31045 3' -58.2 NC_006560.1 + 22905 0.66 0.841051
Target:  5'- cCCGAgGUggCGGAGGCGcGCC---GGCg -3'
miRNA:   3'- -GGUUgCGgaGCCUCCGC-CGGuucUCG- -5'
31045 3' -58.2 NC_006560.1 + 2333 0.66 0.841051
Target:  5'- gCgGGCGagUCGGcGGcGCGGCCGucGAGCg -3'
miRNA:   3'- -GgUUGCggAGCC-UC-CGCCGGUu-CUCG- -5'
31045 3' -58.2 NC_006560.1 + 137837 0.66 0.841051
Target:  5'- gCCugaGCCUCGacaAGGUGGCCAucuGCu -3'
miRNA:   3'- -GGuugCGGAGCc--UCCGCCGGUucuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.