miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31045 3' -58.2 NC_006560.1 + 91922 1.12 0.001246
Target:  5'- gCCAACGCCUCGGAGGCGGCCAAGAGCc -3'
miRNA:   3'- -GGUUGCGGAGCCUCCGCCGGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 135982 0.87 0.057799
Target:  5'- cCCGGCGCg-CGGuGGCGGCCGGGGGCg -3'
miRNA:   3'- -GGUUGCGgaGCCuCCGCCGGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 117994 0.81 0.154251
Target:  5'- gCGGCGCCcgCGGcGGCGGCCGAGGccGCg -3'
miRNA:   3'- gGUUGCGGa-GCCuCCGCCGGUUCU--CG- -5'
31045 3' -58.2 NC_006560.1 + 73023 0.8 0.166225
Target:  5'- aCCAuCGCC-CGcGAGGUGGCCGAGuGCu -3'
miRNA:   3'- -GGUuGCGGaGC-CUCCGCCGGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 85549 0.8 0.183483
Target:  5'- -gGGCGCCcguggggggCGGGGGCGGCuCGGGGGCg -3'
miRNA:   3'- ggUUGCGGa--------GCCUCCGCCG-GUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 142351 0.79 0.192693
Target:  5'- cCCGcgcGCGCCUCGGGggccgggggcGGCGGCCuccggGAGGGCc -3'
miRNA:   3'- -GGU---UGCGGAGCCU----------CCGCCGG-----UUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 76721 0.79 0.192693
Target:  5'- gCCGGCgGCCcUGGAGGCGGCgCGcGAGCa -3'
miRNA:   3'- -GGUUG-CGGaGCCUCCGCCG-GUuCUCG- -5'
31045 3' -58.2 NC_006560.1 + 4620 0.79 0.212332
Target:  5'- cCCGAgGCCUCGucGGCGuCCAGGGGCa -3'
miRNA:   3'- -GGUUgCGGAGCcuCCGCcGGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 130076 0.79 0.217504
Target:  5'- gCGGCGCCgcgCGGGGGCG-CCAuGGGCg -3'
miRNA:   3'- gGUUGCGGa--GCCUCCGCcGGUuCUCG- -5'
31045 3' -58.2 NC_006560.1 + 65107 0.78 0.239277
Target:  5'- aCCAugGCCcCGG-GGCgGGCCGcgGGGGCg -3'
miRNA:   3'- -GGUugCGGaGCCuCCG-CCGGU--UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 94426 0.78 0.239277
Target:  5'- cCCcACGCCgccggguucUCGGAGGCGGCgCGGGcGCg -3'
miRNA:   3'- -GGuUGCGG---------AGCCUCCGCCG-GUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 42469 0.78 0.244997
Target:  5'- cCCGGcCGCCgUCGG-GGCGGUCGAGGGg -3'
miRNA:   3'- -GGUU-GCGG-AGCCuCCGCCGGUUCUCg -5'
31045 3' -58.2 NC_006560.1 + 54915 0.78 0.244997
Target:  5'- gCCGAgGCgCUCGGgggccgGGGCGGCCAucgucGGGGCu -3'
miRNA:   3'- -GGUUgCG-GAGCC------UCCGCCGGU-----UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 82608 0.78 0.250831
Target:  5'- cCCGAgGCCcCGGAcGGCGGCUggGcGGCg -3'
miRNA:   3'- -GGUUgCGGaGCCU-CCGCCGGuuC-UCG- -5'
31045 3' -58.2 NC_006560.1 + 142750 0.78 0.250831
Target:  5'- cCCGGCGCC-CGGGccccGGgGGCgCGGGAGCg -3'
miRNA:   3'- -GGUUGCGGaGCCU----CCgCCG-GUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 85265 0.77 0.256179
Target:  5'- gCCGGCGCUgCGGAGGCGGaCCGccgucuccuccucGGGGUg -3'
miRNA:   3'- -GGUUGCGGaGCCUCCGCC-GGU-------------UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 16344 0.77 0.256779
Target:  5'- gCAGCGCCgccaGGAGcGaCGGCCAcGGAGCg -3'
miRNA:   3'- gGUUGCGGag--CCUC-C-GCCGGU-UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 70124 0.77 0.256779
Target:  5'- cCCcgUGCCcccgcCGGAGGUGGCCAcGAGCc -3'
miRNA:   3'- -GGuuGCGGa----GCCUCCGCCGGUuCUCG- -5'
31045 3' -58.2 NC_006560.1 + 146876 0.77 0.262841
Target:  5'- cCCAGCGCCUgGGccaGGGCcugGGCCAGG-GCc -3'
miRNA:   3'- -GGUUGCGGAgCC---UCCG---CCGGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 133156 0.77 0.26902
Target:  5'- gCAGCGCgcgaaguagucCUCGGAGGCGG-UGAGGGCg -3'
miRNA:   3'- gGUUGCG-----------GAGCCUCCGCCgGUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.