miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31045 3' -58.2 NC_006560.1 + 253 0.73 0.425978
Target:  5'- cCCAacuGCGUCUCGGuGGaGGCCGGGucGCg -3'
miRNA:   3'- -GGU---UGCGGAGCCuCCgCCGGUUCu-CG- -5'
31045 3' -58.2 NC_006560.1 + 514 0.7 0.615899
Target:  5'- gCCAcggGCGCCg-GGGGGCGGCgGccGGCc -3'
miRNA:   3'- -GGU---UGCGGagCCUCCGCCGgUucUCG- -5'
31045 3' -58.2 NC_006560.1 + 973 0.7 0.582984
Target:  5'- gCCugcACGCC-CGGGGGCgcgccccucgccccGGCCGGG-GCg -3'
miRNA:   3'- -GGu--UGCGGaGCCUCCG--------------CCGGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 1138 0.69 0.645938
Target:  5'- uCCGGCccgGCCUcCGGGguuccuGGCGGCCGGGuucucuGCg -3'
miRNA:   3'- -GGUUG---CGGA-GCCU------CCGCCGGUUCu-----CG- -5'
31045 3' -58.2 NC_006560.1 + 1469 0.73 0.443535
Target:  5'- cCCGugcgcGCGCCccaUCGGAGGCGcgcggcccacGCCGgcgGGAGCg -3'
miRNA:   3'- -GGU-----UGCGG---AGCCUCCGC----------CGGU---UCUCG- -5'
31045 3' -58.2 NC_006560.1 + 1948 0.67 0.790281
Target:  5'- cCCAguccggggucGCGCCccccagggCGGGGGCggGGCUcGGGGCc -3'
miRNA:   3'- -GGU----------UGCGGa-------GCCUCCG--CCGGuUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 2058 0.71 0.576041
Target:  5'- cCCAGCGCaCgcgcggcgCGGcGGCGGgguCCGGGGGCc -3'
miRNA:   3'- -GGUUGCG-Ga-------GCCuCCGCC---GGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 2181 0.66 0.848918
Target:  5'- gCAGgGCCUCGGGcccggcgcGcGCGGCCGcgcGGuccAGCg -3'
miRNA:   3'- gGUUgCGGAGCCU--------C-CGCCGGU---UC---UCG- -5'
31045 3' -58.2 NC_006560.1 + 2333 0.66 0.841051
Target:  5'- gCgGGCGagUCGGcGGcGCGGCCGucGAGCg -3'
miRNA:   3'- -GgUUGCggAGCC-UC-CGCCGGUu-CUCG- -5'
31045 3' -58.2 NC_006560.1 + 2475 0.72 0.483535
Target:  5'- gCGGCGCgUCGGgguagaggcgcgcgcAGGCGGCCucGAcGCg -3'
miRNA:   3'- gGUUGCGgAGCC---------------UCCGCCGGuuCU-CG- -5'
31045 3' -58.2 NC_006560.1 + 2707 0.69 0.685806
Target:  5'- gCGGCGgC-CGGcGGCGGCCGccAGCa -3'
miRNA:   3'- gGUUGCgGaGCCuCCGCCGGUucUCG- -5'
31045 3' -58.2 NC_006560.1 + 2801 0.7 0.599909
Target:  5'- cCCAGCGCCgagacgUCGGGGGgcccgguccaguugcCGGCCcAG-GCg -3'
miRNA:   3'- -GGUUGCGG------AGCCUCC---------------GCCGGuUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 3046 0.71 0.53679
Target:  5'- cCCGAgGCg-CGGA-GCGGcCCGAGGGCg -3'
miRNA:   3'- -GGUUgCGgaGCCUcCGCC-GGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 3145 0.72 0.516551
Target:  5'- gCGGCGCgccagggCUCGGggaagagcGGGUGGuCCGAGAGCu -3'
miRNA:   3'- gGUUGCG-------GAGCC--------UCCGCC-GGUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 3207 0.66 0.848918
Target:  5'- gCAguAgGCCUCGaGGGCGGCgGcggcGGGCg -3'
miRNA:   3'- gGU--UgCGGAGCcUCCGCCGgUu---CUCG- -5'
31045 3' -58.2 NC_006560.1 + 3272 0.72 0.517508
Target:  5'- gCCAGcCGCCgCGGGGGUcgGGCCcgccGGGCg -3'
miRNA:   3'- -GGUU-GCGGaGCCUCCG--CCGGuu--CUCG- -5'
31045 3' -58.2 NC_006560.1 + 3366 0.68 0.72499
Target:  5'- gUCGGCGUCggCGGgcGGGCGGgCGGGcGCg -3'
miRNA:   3'- -GGUUGCGGa-GCC--UCCGCCgGUUCuCG- -5'
31045 3' -58.2 NC_006560.1 + 3412 0.68 0.738443
Target:  5'- --cGCGCCggCGGgcGGGCGGCgggcgcgggcgcccgCGGGGGCg -3'
miRNA:   3'- gguUGCGGa-GCC--UCCGCCG---------------GUUCUCG- -5'
31045 3' -58.2 NC_006560.1 + 3559 0.67 0.807835
Target:  5'- gCGGCGCCgaCGGAGcGCaccuGCCGcGGGCu -3'
miRNA:   3'- gGUUGCGGa-GCCUC-CGc---CGGUuCUCG- -5'
31045 3' -58.2 NC_006560.1 + 3657 0.68 0.705517
Target:  5'- cUCGGCGCCgccggggacgCGGAGGUcgccgcgcaGGCgCAuGAGCg -3'
miRNA:   3'- -GGUUGCGGa---------GCCUCCG---------CCG-GUuCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.