miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31045 5' -58 NC_006560.1 + 102536 0.66 0.824475
Target:  5'- cCGGCA-GCucGGCGGCCUGCgCGacGgcGUu -3'
miRNA:   3'- -GCCGUaCGu-CCGCCGGAUG-GU--CuuCA- -5'
31045 5' -58 NC_006560.1 + 142674 0.66 0.824475
Target:  5'- gGGUGagggGC-GGCGGCggACCGGAGGg -3'
miRNA:   3'- gCCGUa---CGuCCGCCGgaUGGUCUUCa -5'
31045 5' -58 NC_006560.1 + 14630 0.66 0.824475
Target:  5'- gGGCccGCGGGCGGCacgGCCGc---- -3'
miRNA:   3'- gCCGuaCGUCCGCCGga-UGGUcuuca -5'
31045 5' -58 NC_006560.1 + 20067 0.66 0.824475
Target:  5'- gGGCGUuccgacGgGGGCGGCUccgUGCCGGGAc- -3'
miRNA:   3'- gCCGUA------CgUCCGCCGG---AUGGUCUUca -5'
31045 5' -58 NC_006560.1 + 33671 0.66 0.824475
Target:  5'- aGGCGagcccgGCGGGC-GUCUGCgGGGAGg -3'
miRNA:   3'- gCCGUa-----CGUCCGcCGGAUGgUCUUCa -5'
31045 5' -58 NC_006560.1 + 63947 0.66 0.824475
Target:  5'- uGGUcguUGUAGGCGGCC-ACgAuGGAGUc -3'
miRNA:   3'- gCCGu--ACGUCCGCCGGaUGgU-CUUCA- -5'
31045 5' -58 NC_006560.1 + 78803 0.66 0.824475
Target:  5'- cCGGCGUGgAGGUucucgccgGGCUcGCCGcGAAGg -3'
miRNA:   3'- -GCCGUACgUCCG--------CCGGaUGGU-CUUCa -5'
31045 5' -58 NC_006560.1 + 86958 0.66 0.824475
Target:  5'- gGGCA-GCAGGaagcccuucUGGCCgGCCAGAc-- -3'
miRNA:   3'- gCCGUaCGUCC---------GCCGGaUGGUCUuca -5'
31045 5' -58 NC_006560.1 + 139072 0.66 0.824475
Target:  5'- gGGCccGgGGGCGcGCCcUGCCGGccGUg -3'
miRNA:   3'- gCCGuaCgUCCGC-CGG-AUGGUCuuCA- -5'
31045 5' -58 NC_006560.1 + 1882 0.66 0.824475
Target:  5'- gGGCGggggucGCGGGCGGCggcgccggCUACCAGu--- -3'
miRNA:   3'- gCCGUa-----CGUCCGCCG--------GAUGGUCuuca -5'
31045 5' -58 NC_006560.1 + 9965 0.66 0.824475
Target:  5'- uCGGCggGCGaGCGGCCUcgggcaGCCGcGGGUg -3'
miRNA:   3'- -GCCGuaCGUcCGCCGGA------UGGUcUUCA- -5'
31045 5' -58 NC_006560.1 + 47856 0.66 0.824475
Target:  5'- aCGGgGU-CcGGCGGCggGCCGGggGUc -3'
miRNA:   3'- -GCCgUAcGuCCGCCGgaUGGUCuuCA- -5'
31045 5' -58 NC_006560.1 + 16386 0.66 0.815904
Target:  5'- uGGCGgcGCGGGCGGgCgucGCCuGGAGc -3'
miRNA:   3'- gCCGUa-CGUCCGCCgGa--UGGuCUUCa -5'
31045 5' -58 NC_006560.1 + 149475 0.66 0.815904
Target:  5'- gCGGCAgacgGCcGGCGGCCcggGCCGa---- -3'
miRNA:   3'- -GCCGUa---CGuCCGCCGGa--UGGUcuuca -5'
31045 5' -58 NC_006560.1 + 33828 0.66 0.815904
Target:  5'- gGGUcgGCGGGgguCGGCCgcggGCguGggGg -3'
miRNA:   3'- gCCGuaCGUCC---GCCGGa---UGguCuuCa -5'
31045 5' -58 NC_006560.1 + 134630 0.66 0.815904
Target:  5'- cCGGCc--CAGaGCGGCg-GCCAGAGGa -3'
miRNA:   3'- -GCCGuacGUC-CGCCGgaUGGUCUUCa -5'
31045 5' -58 NC_006560.1 + 137636 0.66 0.815904
Target:  5'- gCGGCcgcgggGCuGGCGGagCUGCUGGAGGa -3'
miRNA:   3'- -GCCGua----CGuCCGCCg-GAUGGUCUUCa -5'
31045 5' -58 NC_006560.1 + 45728 0.66 0.813299
Target:  5'- gCGGC--GCAGGCGcgccgcgggcucgcGCCcccGCCAGggGUu -3'
miRNA:   3'- -GCCGuaCGUCCGC--------------CGGa--UGGUCuuCA- -5'
31045 5' -58 NC_006560.1 + 69573 0.66 0.807166
Target:  5'- gCGGCGguucggcGCGGGcCGGCCcagcccgcuCCGGGAGa -3'
miRNA:   3'- -GCCGUa------CGUCC-GCCGGau-------GGUCUUCa -5'
31045 5' -58 NC_006560.1 + 2837 0.66 0.807166
Target:  5'- cCGGCc--CAGGCGGCCgugucggGCCcgcAGAGGc -3'
miRNA:   3'- -GCCGuacGUCCGCCGGa------UGG---UCUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.