miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31045 5' -58 NC_006560.1 + 1882 0.66 0.824475
Target:  5'- gGGCGggggucGCGGGCGGCggcgccggCUACCAGu--- -3'
miRNA:   3'- gCCGUa-----CGUCCGCCG--------GAUGGUCuuca -5'
31045 5' -58 NC_006560.1 + 2492 0.7 0.570401
Target:  5'- aGGCGcgcGCAGGCGGCCUcgacGCgCGcGAAGa -3'
miRNA:   3'- gCCGUa--CGUCCGCCGGA----UG-GU-CUUCa -5'
31045 5' -58 NC_006560.1 + 2710 0.73 0.400941
Target:  5'- gCGGCcgGC-GGCGGCC-GCCAGcAGg -3'
miRNA:   3'- -GCCGuaCGuCCGCCGGaUGGUCuUCa -5'
31045 5' -58 NC_006560.1 + 2837 0.66 0.807166
Target:  5'- cCGGCc--CAGGCGGCCgugucggGCCcgcAGAGGc -3'
miRNA:   3'- -GCCGuacGUCCGCCGGa------UGG---UCUUCa -5'
31045 5' -58 NC_006560.1 + 3239 0.68 0.672253
Target:  5'- gCGGCGUGUGGGCGGgC--CCGGgcGg -3'
miRNA:   3'- -GCCGUACGUCCGCCgGauGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 3300 0.7 0.550326
Target:  5'- gGGCggGCGGGCGgugagcGCCgcggGCCGGggGc -3'
miRNA:   3'- gCCGuaCGUCCGC------CGGa---UGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 3378 0.67 0.770716
Target:  5'- gGGCggGCGGGCGGgCgcggGCCGGc--- -3'
miRNA:   3'- gCCGuaCGUCCGCCgGa---UGGUCuuca -5'
31045 5' -58 NC_006560.1 + 3416 0.7 0.600822
Target:  5'- cCGGCggGCGGGCGGCggGCgCGGgcGc -3'
miRNA:   3'- -GCCGuaCGUCCGCCGgaUG-GUCuuCa -5'
31045 5' -58 NC_006560.1 + 3640 0.69 0.650862
Target:  5'- aCGGCG-GCGacGGCGGCCUcggcgccGCCGGGGa- -3'
miRNA:   3'- -GCCGUaCGU--CCGCCGGA-------UGGUCUUca -5'
31045 5' -58 NC_006560.1 + 3952 0.71 0.501209
Target:  5'- uCGGCG-GCgaGGGCGGCC-GCCAGgcGg -3'
miRNA:   3'- -GCCGUaCG--UCCGCCGGaUGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 5084 0.71 0.530474
Target:  5'- cCGGCGUGC-GGCGcGCC-GCCcGggGUc -3'
miRNA:   3'- -GCCGUACGuCCGC-CGGaUGGuCuuCA- -5'
31045 5' -58 NC_006560.1 + 9548 0.67 0.751717
Target:  5'- aGGCcgGC-GGCGGCCagccCCAGGGc- -3'
miRNA:   3'- gCCGuaCGuCCGCCGGau--GGUCUUca -5'
31045 5' -58 NC_006560.1 + 9965 0.66 0.824475
Target:  5'- uCGGCggGCGaGCGGCCUcgggcaGCCGcGGGUg -3'
miRNA:   3'- -GCCGuaCGUcCGCCGGA------UGGUcUUCA- -5'
31045 5' -58 NC_006560.1 + 11931 0.66 0.789223
Target:  5'- gGGCccGCAGGaggGGCCggcggGCCAGGu-- -3'
miRNA:   3'- gCCGuaCGUCCg--CCGGa----UGGUCUuca -5'
31045 5' -58 NC_006560.1 + 13574 0.7 0.600822
Target:  5'- cCGGCGgggGCAGGgGGCCccCgCGGAAGc -3'
miRNA:   3'- -GCCGUa--CGUCCgCCGGauG-GUCUUCa -5'
31045 5' -58 NC_006560.1 + 14431 0.66 0.77911
Target:  5'- aGGCGUugucuggGC-GGCGGUCcGCCGGggGc -3'
miRNA:   3'- gCCGUA-------CGuCCGCCGGaUGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 14630 0.66 0.824475
Target:  5'- gGGCccGCGGGCGGCacgGCCGc---- -3'
miRNA:   3'- gCCGuaCGUCCGCCGga-UGGUcuuca -5'
31045 5' -58 NC_006560.1 + 14843 0.73 0.384117
Target:  5'- gCGGCGgggggaGCGuGGCGGCCgggcGCCGGggGg -3'
miRNA:   3'- -GCCGUa-----CGU-CCGCCGGa---UGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 15718 0.67 0.770716
Target:  5'- gGGCG-GCGGGCcggcacggGGCCggcacGCCGGggGc -3'
miRNA:   3'- gCCGUaCGUCCG--------CCGGa----UGGUCuuCa -5'
31045 5' -58 NC_006560.1 + 16386 0.66 0.815904
Target:  5'- uGGCGgcGCGGGCGGgCgucGCCuGGAGc -3'
miRNA:   3'- gCCGUa-CGUCCGCCgGa--UGGuCUUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.