miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31046 3' -58.1 NC_006560.1 + 95172 0.66 0.809808
Target:  5'- cUGG-GGCGCUgCGUGCGCGAgCa--- -3'
miRNA:   3'- cACCuCCGCGA-GUACGCGUUgGacca -5'
31046 3' -58.1 NC_006560.1 + 74049 0.66 0.809808
Target:  5'- -gGGAGcUGCUgCAgcggggGUGCGACCUGGa -3'
miRNA:   3'- caCCUCcGCGA-GUa-----CGCGUUGGACCa -5'
31046 3' -58.1 NC_006560.1 + 81200 0.66 0.809808
Target:  5'- gGUGGGGGCGCgac-G-GCGACCgGGa -3'
miRNA:   3'- -CACCUCCGCGaguaCgCGUUGGaCCa -5'
31046 3' -58.1 NC_006560.1 + 131139 0.66 0.800933
Target:  5'- -cGGGGcgcgcGCGCUCGcccccGCGCGGCuCUGGg -3'
miRNA:   3'- caCCUC-----CGCGAGUa----CGCGUUG-GACCa -5'
31046 3' -58.1 NC_006560.1 + 62463 0.66 0.791905
Target:  5'- -cGGcgcGGGCGCUCAcagGaCGCAG-CUGGUg -3'
miRNA:   3'- caCC---UCCGCGAGUa--C-GCGUUgGACCA- -5'
31046 3' -58.1 NC_006560.1 + 73630 0.66 0.791905
Target:  5'- -gGGAGGUGCgcg-GCGC--CCUGGa -3'
miRNA:   3'- caCCUCCGCGaguaCGCGuuGGACCa -5'
31046 3' -58.1 NC_006560.1 + 28442 0.66 0.791905
Target:  5'- -gGGAGGCGC-CcgGCGgaAGCCcGGa -3'
miRNA:   3'- caCCUCCGCGaGuaCGCg-UUGGaCCa -5'
31046 3' -58.1 NC_006560.1 + 16891 0.66 0.782732
Target:  5'- -cGGGGGCGUUCGUGU-CGACCg--- -3'
miRNA:   3'- caCCUCCGCGAGUACGcGUUGGacca -5'
31046 3' -58.1 NC_006560.1 + 128264 0.66 0.782732
Target:  5'- -aGGAGGCGC---UGCGC-GCCgagGGg -3'
miRNA:   3'- caCCUCCGCGaguACGCGuUGGa--CCa -5'
31046 3' -58.1 NC_006560.1 + 74484 0.66 0.782732
Target:  5'- -cGGAGGCGCgCGcGCGCGccgaggcgGCCcGGg -3'
miRNA:   3'- caCCUCCGCGaGUaCGCGU--------UGGaCCa -5'
31046 3' -58.1 NC_006560.1 + 146581 0.66 0.782732
Target:  5'- -cGGAGGCGCccCcgGCGCccgaGGCCgGGc -3'
miRNA:   3'- caCCUCCGCGa-GuaCGCG----UUGGaCCa -5'
31046 3' -58.1 NC_006560.1 + 148676 0.66 0.773424
Target:  5'- -cGG-GGCGC-CGUGgGCGGCCccgGGg -3'
miRNA:   3'- caCCuCCGCGaGUACgCGUUGGa--CCa -5'
31046 3' -58.1 NC_006560.1 + 138020 0.66 0.773424
Target:  5'- -cGGAGGUGCUCAuUGUGUAcugaggagGCCcGGc -3'
miRNA:   3'- caCCUCCGCGAGU-ACGCGU--------UGGaCCa -5'
31046 3' -58.1 NC_006560.1 + 130087 0.66 0.773424
Target:  5'- -cGGGGGCGC-CAUGgGCGaggacgggcugGCgUGGg -3'
miRNA:   3'- caCCUCCGCGaGUACgCGU-----------UGgACCa -5'
31046 3' -58.1 NC_006560.1 + 33640 0.66 0.773424
Target:  5'- -gGGGGGCGC-CggGgGCGGCCgcgGGc -3'
miRNA:   3'- caCCUCCGCGaGuaCgCGUUGGa--CCa -5'
31046 3' -58.1 NC_006560.1 + 105025 0.66 0.763989
Target:  5'- -cGGAacgGGCGCUCcgcgGCGCcGCCgcgGGg -3'
miRNA:   3'- caCCU---CCGCGAGua--CGCGuUGGa--CCa -5'
31046 3' -58.1 NC_006560.1 + 90303 0.67 0.754437
Target:  5'- cGUGGGgcccgucgccguGGCGCUCcgGgccCGCAACgUGGa -3'
miRNA:   3'- -CACCU------------CCGCGAGuaC---GCGUUGgACCa -5'
31046 3' -58.1 NC_006560.1 + 34467 0.67 0.754437
Target:  5'- -gGGGGGCGUUCGcggGCGUGugCgGGg -3'
miRNA:   3'- caCCUCCGCGAGUa--CGCGUugGaCCa -5'
31046 3' -58.1 NC_006560.1 + 99312 0.67 0.744776
Target:  5'- gGUGG-GGCGCgggggCGUGCGC-GCCgacGGc -3'
miRNA:   3'- -CACCuCCGCGa----GUACGCGuUGGa--CCa -5'
31046 3' -58.1 NC_006560.1 + 56786 0.67 0.744776
Target:  5'- uGUGGguGGGCGUcuUCccGCGCAACgaGGa -3'
miRNA:   3'- -CACC--UCCGCG--AGuaCGCGUUGgaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.