miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31046 5' -52.3 NC_006560.1 + 63511 0.66 0.983579
Target:  5'- aGAGgUUgGAGc-CCGCGAUGGCCg-- -3'
miRNA:   3'- -CUUgAAgUUCaaGGCGCUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 42976 0.66 0.980266
Target:  5'- cGAGCgcgCAGGUaggccUCCGCGAccgcgccccgcagcaCGGCCUc- -3'
miRNA:   3'- -CUUGaa-GUUCA-----AGGCGCU---------------GCCGGAcu -5'
31046 5' -52.3 NC_006560.1 + 47560 0.66 0.979365
Target:  5'- -cGCaUCAucgUuuGCGAgGGCCUGAa -3'
miRNA:   3'- cuUGaAGUucaAggCGCUgCCGGACU- -5'
31046 5' -52.3 NC_006560.1 + 26553 0.66 0.979365
Target:  5'- uGGGCgUCGgauaccGGUUCCgugagcGCGGCGGCCgGAa -3'
miRNA:   3'- -CUUGaAGU------UCAAGG------CGCUGCCGGaCU- -5'
31046 5' -52.3 NC_006560.1 + 116469 0.66 0.975454
Target:  5'- gGAGC-UCGGGggCCGCGACccccgcgccccccgaGGCCagGAg -3'
miRNA:   3'- -CUUGaAGUUCaaGGCGCUG---------------CCGGa-CU- -5'
31046 5' -52.3 NC_006560.1 + 58081 0.66 0.974397
Target:  5'- cGAACccCAGG-UCCGCGuacGCGGCCg-- -3'
miRNA:   3'- -CUUGaaGUUCaAGGCGC---UGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 118692 0.67 0.971611
Target:  5'- cGAGCUcgcCGAGgcCCugGUGGCGGCCUGc -3'
miRNA:   3'- -CUUGAa--GUUCaaGG--CGCUGCCGGACu -5'
31046 5' -52.3 NC_006560.1 + 124572 0.67 0.971611
Target:  5'- -uGCUgcggCGGGggCUGaCGACGGCCUcGAc -3'
miRNA:   3'- cuUGAa---GUUCaaGGC-GCUGCCGGA-CU- -5'
31046 5' -52.3 NC_006560.1 + 54922 0.67 0.965395
Target:  5'- -cGC-UCGGGggCCGgGGCGGCCa-- -3'
miRNA:   3'- cuUGaAGUUCaaGGCgCUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 90824 0.68 0.945831
Target:  5'- cAACcccCAGGUcgaCCGCGACGGCCa-- -3'
miRNA:   3'- cUUGaa-GUUCAa--GGCGCUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 37082 0.68 0.94119
Target:  5'- --uCUUUGAGgaugaCCGCGACGGCCccGAu -3'
miRNA:   3'- cuuGAAGUUCaa---GGCGCUGCCGGa-CU- -5'
31046 5' -52.3 NC_006560.1 + 27067 0.68 0.9363
Target:  5'- --cCUUCAcGGggCUGCGcguuGCGGCCUGGg -3'
miRNA:   3'- cuuGAAGU-UCaaGGCGC----UGCCGGACU- -5'
31046 5' -52.3 NC_006560.1 + 19404 0.69 0.908071
Target:  5'- cGGGCcgggCGAGUcgCCGCGGCGGCgcucggCUGAg -3'
miRNA:   3'- -CUUGaa--GUUCAa-GGCGCUGCCG------GACU- -5'
31046 5' -52.3 NC_006560.1 + 150037 0.7 0.888143
Target:  5'- cGGCgggCGAGgacgaccUCCGCGGCGGCCg-- -3'
miRNA:   3'- cUUGaa-GUUCa------AGGCGCUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 94294 0.7 0.87366
Target:  5'- -uGCUUCGAGgagcugUgCGUGACGGCCa-- -3'
miRNA:   3'- cuUGAAGUUCa-----AgGCGCUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 129407 0.71 0.850238
Target:  5'- gGAACUguUCcGGcUgUGCGGCGGCCUGGc -3'
miRNA:   3'- -CUUGA--AGuUCaAgGCGCUGCCGGACU- -5'
31046 5' -52.3 NC_006560.1 + 74568 0.73 0.759854
Target:  5'- cGGACUUCGGGgggCUGCgGACGGCCc-- -3'
miRNA:   3'- -CUUGAAGUUCaa-GGCG-CUGCCGGacu -5'
31046 5' -52.3 NC_006560.1 + 34794 0.73 0.759854
Target:  5'- gGGGCUgcgGGGUUCCGCGgcGCGGCCgGGg -3'
miRNA:   3'- -CUUGAag-UUCAAGGCGC--UGCCGGaCU- -5'
31046 5' -52.3 NC_006560.1 + 119728 0.73 0.750001
Target:  5'- cGAGCggaUCAAGaUCuucgucugCGUGACGGCCUGAc -3'
miRNA:   3'- -CUUGa--AGUUCaAG--------GCGCUGCCGGACU- -5'
31046 5' -52.3 NC_006560.1 + 48106 0.74 0.678521
Target:  5'- gGAGCUUCccgacgCCGCGACGGCCccGAg -3'
miRNA:   3'- -CUUGAAGuucaa-GGCGCUGCCGGa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.