miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31047 3' -53.7 NC_006560.1 + 61013 0.66 0.962868
Target:  5'- cGAGCUCGuGGAgCUGaGGUACGUc-- -3'
miRNA:   3'- -CUCGAGCuCUUgGACgUCAUGCAccu -5'
31047 3' -53.7 NC_006560.1 + 69926 0.66 0.962868
Target:  5'- uGGcCUCGGGuACCUGCcgacCGUGGAg -3'
miRNA:   3'- cUC-GAGCUCuUGGACGucauGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 116469 0.66 0.958531
Target:  5'- gGAGCUCGGGGgccgcgacccccgcGCCccccgaggccaggagGCGGUgcagcucgGCGUGGAg -3'
miRNA:   3'- -CUCGAGCUCU--------------UGGa--------------CGUCA--------UGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 48222 0.66 0.955455
Target:  5'- -uGCUCGAGGACCUGgGcuuCGgGGAc -3'
miRNA:   3'- cuCGAGCUCUUGGACgUcauGCaCCU- -5'
31047 3' -53.7 NC_006560.1 + 103057 0.66 0.951396
Target:  5'- -cGCUCGGGGGCCgccgguuccGCGGggACGgggGGAc -3'
miRNA:   3'- cuCGAGCUCUUGGa--------CGUCa-UGCa--CCU- -5'
31047 3' -53.7 NC_006560.1 + 114682 0.66 0.947097
Target:  5'- cGAGCucgUCGAGGACCcgUGCGGgcUGUuccaGGAg -3'
miRNA:   3'- -CUCG---AGCUCUUGG--ACGUCauGCA----CCU- -5'
31047 3' -53.7 NC_006560.1 + 120946 0.66 0.947097
Target:  5'- cGGGCUCGGuGGCuUUGCGG-AUGUGGGc -3'
miRNA:   3'- -CUCGAGCUcUUG-GACGUCaUGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 71030 0.67 0.942554
Target:  5'- uGGCUgcugaugaaCGAGAugCUGCAGgugACGgacgGGGu -3'
miRNA:   3'- cUCGA---------GCUCUugGACGUCa--UGCa---CCU- -5'
31047 3' -53.7 NC_006560.1 + 97476 0.67 0.942554
Target:  5'- cGAGUUCGcGcGCCUGCAGUucACGUa-- -3'
miRNA:   3'- -CUCGAGCuCuUGGACGUCA--UGCAccu -5'
31047 3' -53.7 NC_006560.1 + 112580 0.67 0.942554
Target:  5'- -cGUUCGAGGACC-GCGGguacccCGUGGu -3'
miRNA:   3'- cuCGAGCUCUUGGaCGUCau----GCACCu -5'
31047 3' -53.7 NC_006560.1 + 24390 0.67 0.942554
Target:  5'- cGAGCcCGAGGACgUGCGcGUGC-UGGu -3'
miRNA:   3'- -CUCGaGCUCUUGgACGU-CAUGcACCu -5'
31047 3' -53.7 NC_006560.1 + 75115 0.67 0.941616
Target:  5'- cGGCUCGGGGcccugggggccgcgGCCgccgaccuggcggcgGCGGUGCGgcgGGAg -3'
miRNA:   3'- cUCGAGCUCU--------------UGGa--------------CGUCAUGCa--CCU- -5'
31047 3' -53.7 NC_006560.1 + 95201 0.67 0.937765
Target:  5'- cGAGCUCGAgaaGAugCUGCGGgucaGCGUc-- -3'
miRNA:   3'- -CUCGAGCU---CUugGACGUCa---UGCAccu -5'
31047 3' -53.7 NC_006560.1 + 77004 0.67 0.937765
Target:  5'- -cGCUCGccgGGGACCUGCccc-CGUGGGc -3'
miRNA:   3'- cuCGAGC---UCUUGGACGucauGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 122388 0.67 0.921905
Target:  5'- cAGCUCGGGucAGCCcccGCGGUACGccccggGGAu -3'
miRNA:   3'- cUCGAGCUC--UUGGa--CGUCAUGCa-----CCU- -5'
31047 3' -53.7 NC_006560.1 + 98170 0.67 0.921337
Target:  5'- cGGGCcucuacuccuucuUCGAGGGCCU-CGGggACGUGGGc -3'
miRNA:   3'- -CUCG-------------AGCUCUUGGAcGUCa-UGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 54922 0.68 0.910085
Target:  5'- -cGCUCGGGGGCCgggGCGGccauCGUcGGGg -3'
miRNA:   3'- cuCGAGCUCUUGGa--CGUCau--GCA-CCU- -5'
31047 3' -53.7 NC_006560.1 + 56020 0.68 0.903805
Target:  5'- uGAGCUCGuGcACCacgagGCGcUGCGUGGGg -3'
miRNA:   3'- -CUCGAGCuCuUGGa----CGUcAUGCACCU- -5'
31047 3' -53.7 NC_006560.1 + 116804 0.68 0.89728
Target:  5'- aGAGCUCGGGGGCCaugagGCcgccGUuCGUGGu -3'
miRNA:   3'- -CUCGAGCUCUUGGa----CGu---CAuGCACCu -5'
31047 3' -53.7 NC_006560.1 + 78461 0.68 0.89728
Target:  5'- aGGGCUCG-GAGCUggaGCuGUGCGUGa- -3'
miRNA:   3'- -CUCGAGCuCUUGGa--CGuCAUGCACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.