miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31047 5' -59.2 NC_006560.1 + 124390 0.66 0.784286
Target:  5'- gGCCCGCcugggcuaucucuucUCGCUGGCgAcGGCccUCGAGg -3'
miRNA:   3'- aCGGGUGc--------------AGCGACCGgU-UCG--AGCUC- -5'
31047 5' -59.2 NC_006560.1 + 250 0.66 0.783378
Target:  5'- gGCCCcaacuGCGUCucgguGgaGGCCGGGUcgCGAGg -3'
miRNA:   3'- aCGGG-----UGCAG-----CgaCCGGUUCGa-GCUC- -5'
31047 5' -59.2 NC_006560.1 + 2858 0.66 0.783378
Target:  5'- gGCCCGCaGagGCgguUGGCCAGcGCggCGAGc -3'
miRNA:   3'- aCGGGUG-CagCG---ACCGGUU-CGa-GCUC- -5'
31047 5' -59.2 NC_006560.1 + 39897 0.66 0.783378
Target:  5'- gGUCUcCGUCGUucgGGCCGGggugcGCUCGGGu -3'
miRNA:   3'- aCGGGuGCAGCGa--CCGGUU-----CGAGCUC- -5'
31047 5' -59.2 NC_006560.1 + 104567 0.66 0.783378
Target:  5'- gUGUuuGCGUggacgcucgaccUGCUGGCCGAGCgccugCGGu -3'
miRNA:   3'- -ACGggUGCA------------GCGACCGGUUCGa----GCUc -5'
31047 5' -59.2 NC_006560.1 + 4675 0.66 0.783378
Target:  5'- gGCCCgugGCGUCGCgcccGGCCAcGGCggCGc- -3'
miRNA:   3'- aCGGG---UGCAGCGa---CCGGU-UCGa-GCuc -5'
31047 5' -59.2 NC_006560.1 + 10406 0.66 0.783378
Target:  5'- -uCCCGCuGUCGCUcGGUCGGGcCUCGcGGa -3'
miRNA:   3'- acGGGUG-CAGCGA-CCGGUUC-GAGC-UC- -5'
31047 5' -59.2 NC_006560.1 + 47472 0.66 0.783378
Target:  5'- cGCCCGCaUgGCagcGGCCcAGCUCuGGGa -3'
miRNA:   3'- aCGGGUGcAgCGa--CCGGuUCGAG-CUC- -5'
31047 5' -59.2 NC_006560.1 + 81389 0.66 0.783378
Target:  5'- gGCCCGC--UGCU-GCCGGGCcagCGAGg -3'
miRNA:   3'- aCGGGUGcaGCGAcCGGUUCGa--GCUC- -5'
31047 5' -59.2 NC_006560.1 + 100215 0.66 0.783378
Target:  5'- cGCCCagACG-CGCccGCCGAGCcCGAGc -3'
miRNA:   3'- aCGGG--UGCaGCGacCGGUUCGaGCUC- -5'
31047 5' -59.2 NC_006560.1 + 130674 0.66 0.783378
Target:  5'- cGgCgGCGUCGCUGGCgGuccGCaUCGAc -3'
miRNA:   3'- aCgGgUGCAGCGACCGgUu--CG-AGCUc -5'
31047 5' -59.2 NC_006560.1 + 83841 0.66 0.782469
Target:  5'- gGCCUAC-UgGCUGGCCcugcggcgccuccGGGC-CGAGg -3'
miRNA:   3'- aCGGGUGcAgCGACCGG-------------UUCGaGCUC- -5'
31047 5' -59.2 NC_006560.1 + 11292 0.66 0.777904
Target:  5'- cGCCCAgGcgcgccagggccgccUCGUUcacGGCCGAgauGCUCGGGg -3'
miRNA:   3'- aCGGGUgC---------------AGCGA---CCGGUU---CGAGCUC- -5'
31047 5' -59.2 NC_006560.1 + 24505 0.66 0.774229
Target:  5'- cUGCUCGCcG-CGCUGGCCAAccGCcucugCGGGc -3'
miRNA:   3'- -ACGGGUG-CaGCGACCGGUU--CGa----GCUC- -5'
31047 5' -59.2 NC_006560.1 + 32906 0.66 0.774229
Target:  5'- cGCCCGCGggguagcCGCcgggGGCCGagGGCagGGGg -3'
miRNA:   3'- aCGGGUGCa------GCGa---CCGGU--UCGagCUC- -5'
31047 5' -59.2 NC_006560.1 + 83719 0.66 0.774229
Target:  5'- cGCCgGCGcCGg-GGCCcgucccgacgcgGAGCUCGGGc -3'
miRNA:   3'- aCGGgUGCaGCgaCCGG------------UUCGAGCUC- -5'
31047 5' -59.2 NC_006560.1 + 110306 0.66 0.774229
Target:  5'- gGCCCuCGUCGCccuguuggcGGCCGcGCagGAGa -3'
miRNA:   3'- aCGGGuGCAGCGa--------CCGGUuCGagCUC- -5'
31047 5' -59.2 NC_006560.1 + 130960 0.66 0.774229
Target:  5'- cUGCCCcCGaucuUCGCcuuccuggGGcCCGAGUUCGAGc -3'
miRNA:   3'- -ACGGGuGC----AGCGa-------CC-GGUUCGAGCUC- -5'
31047 5' -59.2 NC_006560.1 + 145419 0.66 0.774229
Target:  5'- gGuCCCcCGUCGCucUGGCCGGGcCUCu-- -3'
miRNA:   3'- aC-GGGuGCAGCG--ACCGGUUC-GAGcuc -5'
31047 5' -59.2 NC_006560.1 + 23212 0.66 0.774229
Target:  5'- gGCCCACGcCGCcgccgccgUGGCCAugAGC-CGc- -3'
miRNA:   3'- aCGGGUGCaGCG--------ACCGGU--UCGaGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.