miRNA display CGI


Results 1 - 20 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31048 3' -64.4 NC_006560.1 + 44078 0.65 0.539527
Target:  5'- -cUCGU-AGCGCgccuucuCGCUCGCGGuCCCCGg -3'
miRNA:   3'- caAGCGcUCGCG-------GCGGGCGUC-GGGGU- -5'
31048 3' -64.4 NC_006560.1 + 65149 0.65 0.537634
Target:  5'- --aCGaCGGGgGCCGCgucggcgguggugaUCGCGGUCCCGg -3'
miRNA:   3'- caaGC-GCUCgCGGCG--------------GGCGUCGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 52001 0.66 0.531025
Target:  5'- --gCGCGGugacCGCCGcCCCGCcaccacGCCCCGc -3'
miRNA:   3'- caaGCGCUc---GCGGC-GGGCGu-----CGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 15138 0.66 0.531025
Target:  5'- -gUCGCGGGCucuggGCCcCCCGC--CCCCGg -3'
miRNA:   3'- caAGCGCUCG-----CGGcGGGCGucGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 35404 0.66 0.531025
Target:  5'- ---aGCGgccGGCGCCGgCCGC-GCCCg- -3'
miRNA:   3'- caagCGC---UCGCGGCgGGCGuCGGGgu -5'
31048 3' -64.4 NC_006560.1 + 1256 0.66 0.531025
Target:  5'- ---gGCGGG-GCC-CCCGCgaAGCCCCc -3'
miRNA:   3'- caagCGCUCgCGGcGGGCG--UCGGGGu -5'
31048 3' -64.4 NC_006560.1 + 100711 0.66 0.531025
Target:  5'- aGUUCGCcGGCGUCGCcgcucCCGUacAGCgCCAg -3'
miRNA:   3'- -CAAGCGcUCGCGGCG-----GGCG--UCGgGGU- -5'
31048 3' -64.4 NC_006560.1 + 135081 0.66 0.531025
Target:  5'- -gUCGgGGGCGCCGCCguacCGGCgCaCCAg -3'
miRNA:   3'- caAGCgCUCGCGGCGGgc--GUCG-G-GGU- -5'
31048 3' -64.4 NC_006560.1 + 7718 0.66 0.531025
Target:  5'- --cUGCGAGCaGCCGucugcgcaCCUGCAGaCCCUg -3'
miRNA:   3'- caaGCGCUCG-CGGC--------GGGCGUC-GGGGu -5'
31048 3' -64.4 NC_006560.1 + 42973 0.66 0.530083
Target:  5'- --gUGCGAGCGCgcagguaggccucCGCgaCCGC-GCCCCGc -3'
miRNA:   3'- caaGCGCUCGCG-------------GCG--GGCGuCGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 29754 0.66 0.525384
Target:  5'- --cUGCGAGC-CCggGCCCGCcucccgggggccgcgGGCCCCc -3'
miRNA:   3'- caaGCGCUCGcGG--CGGGCG---------------UCGGGGu -5'
31048 3' -64.4 NC_006560.1 + 130665 0.66 0.521636
Target:  5'- aGUgCGCGucggcGGCGUCGCUgGCGGUCCgCAu -3'
miRNA:   3'- -CAaGCGC-----UCGCGGCGGgCGUCGGG-GU- -5'
31048 3' -64.4 NC_006560.1 + 133502 0.66 0.521636
Target:  5'- --gCGCGAGCgGCCGCgCCggccggggucgGCGGCUUCGu -3'
miRNA:   3'- caaGCGCUCG-CGGCG-GG-----------CGUCGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 148641 0.66 0.521636
Target:  5'- ---gGCGGGCcCCGCCggccggagaCGCGGCCCa- -3'
miRNA:   3'- caagCGCUCGcGGCGG---------GCGUCGGGgu -5'
31048 3' -64.4 NC_006560.1 + 32843 0.66 0.521636
Target:  5'- --aCGCGGGCGgCGg--GCAGCCCCc -3'
miRNA:   3'- caaGCGCUCGCgGCgggCGUCGGGGu -5'
31048 3' -64.4 NC_006560.1 + 43728 0.66 0.521636
Target:  5'- -cUCGcCGGGCGCguacUCCGCGGCCgCCGc -3'
miRNA:   3'- caAGC-GCUCGCGgc--GGGCGUCGG-GGU- -5'
31048 3' -64.4 NC_006560.1 + 100516 0.66 0.521636
Target:  5'- -aUCGCG-GCGCUGgCgGCcGCCUCGa -3'
miRNA:   3'- caAGCGCuCGCGGCgGgCGuCGGGGU- -5'
31048 3' -64.4 NC_006560.1 + 102425 0.66 0.521636
Target:  5'- --cCGCG-GCGuCCGCcuccucggccgCCGCGGCCgCCGu -3'
miRNA:   3'- caaGCGCuCGC-GGCG-----------GGCGUCGG-GGU- -5'
31048 3' -64.4 NC_006560.1 + 120713 0.66 0.521636
Target:  5'- cGUUCGCGAGCaGCCccgucggugcGCgCGCAGUguuuUCCGc -3'
miRNA:   3'- -CAAGCGCUCG-CGG----------CGgGCGUCG----GGGU- -5'
31048 3' -64.4 NC_006560.1 + 124911 0.66 0.521636
Target:  5'- --cCGCGAccGCcacgGCUGCCUG-AGCCCCAc -3'
miRNA:   3'- caaGCGCU--CG----CGGCGGGCgUCGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.