miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31048 5' -54.8 NC_006560.1 + 87552 0.66 0.931885
Target:  5'- cUCGaGGACCGUG---GGCGCggGCAGc -3'
miRNA:   3'- aAGC-CCUGGUACuugUCGCGgaUGUC- -5'
31048 5' -54.8 NC_006560.1 + 83519 0.66 0.931885
Target:  5'- -gCGGG-CCGcGGGCGcGCGCCcGCGGa -3'
miRNA:   3'- aaGCCCuGGUaCUUGU-CGCGGaUGUC- -5'
31048 5' -54.8 NC_006560.1 + 17513 0.66 0.931885
Target:  5'- -gCGGGGCCG---GCGGCGCCg---- -3'
miRNA:   3'- aaGCCCUGGUacuUGUCGCGGauguc -5'
31048 5' -54.8 NC_006560.1 + 40724 0.66 0.931363
Target:  5'- -gCGGGGCucaccaccccgaaCAUGcAGCGGCGCUggUACAGc -3'
miRNA:   3'- aaGCCCUG-------------GUAC-UUGUCGCGG--AUGUC- -5'
31048 5' -54.8 NC_006560.1 + 27061 0.66 0.926554
Target:  5'- -cCGGGGCCuucacgGGGCuGCGCgUUGCGGc -3'
miRNA:   3'- aaGCCCUGGua----CUUGuCGCG-GAUGUC- -5'
31048 5' -54.8 NC_006560.1 + 102702 0.66 0.926554
Target:  5'- gUCGGcGACgAUGA--AGCGCCUGUGGa -3'
miRNA:   3'- aAGCC-CUGgUACUugUCGCGGAUGUC- -5'
31048 5' -54.8 NC_006560.1 + 123959 0.66 0.926554
Target:  5'- --gGGGACgAggGAGCGGCGCCggGCc- -3'
miRNA:   3'- aagCCCUGgUa-CUUGUCGCGGa-UGuc -5'
31048 5' -54.8 NC_006560.1 + 132830 0.66 0.920973
Target:  5'- -aCGuGGACCAUGAACAugaGCGUauuCAGc -3'
miRNA:   3'- aaGC-CCUGGUACUUGU---CGCGgauGUC- -5'
31048 5' -54.8 NC_006560.1 + 109498 0.66 0.920973
Target:  5'- --aGGGGCCGUGugUGGCGUCgugccACGGg -3'
miRNA:   3'- aagCCCUGGUACuuGUCGCGGa----UGUC- -5'
31048 5' -54.8 NC_006560.1 + 35370 0.66 0.920973
Target:  5'- -gCGGGGCCc--GGCuGCGCC-ACAGg -3'
miRNA:   3'- aaGCCCUGGuacUUGuCGCGGaUGUC- -5'
31048 5' -54.8 NC_006560.1 + 69102 0.66 0.920401
Target:  5'- cUCGGGcgagccgccguccGCCGgcgcccAGCGGCGCCUGCu- -3'
miRNA:   3'- aAGCCC-------------UGGUac----UUGUCGCGGAUGuc -5'
31048 5' -54.8 NC_006560.1 + 118989 0.66 0.915142
Target:  5'- cUCGGGGagGUcGcGCGGCGCCUGCc- -3'
miRNA:   3'- aAGCCCUggUA-CuUGUCGCGGAUGuc -5'
31048 5' -54.8 NC_006560.1 + 15688 0.66 0.915142
Target:  5'- -cCGGGACC--GAGCgccacaggGGCGCC-GCAGg -3'
miRNA:   3'- aaGCCCUGGuaCUUG--------UCGCGGaUGUC- -5'
31048 5' -54.8 NC_006560.1 + 129424 0.66 0.915142
Target:  5'- -gCGGcGGCC-UGGcGCAGCGUCUGCGc -3'
miRNA:   3'- aaGCC-CUGGuACU-UGUCGCGGAUGUc -5'
31048 5' -54.8 NC_006560.1 + 25989 0.66 0.915142
Target:  5'- -gCGaGGGCCGcgggggGAGgGGCGCCgUGCGGg -3'
miRNA:   3'- aaGC-CCUGGUa-----CUUgUCGCGG-AUGUC- -5'
31048 5' -54.8 NC_006560.1 + 129640 0.66 0.909063
Target:  5'- -gCGGGGCCGUGGGCGaggcggagcacGCGCUgaUGCu- -3'
miRNA:   3'- aaGCCCUGGUACUUGU-----------CGCGG--AUGuc -5'
31048 5' -54.8 NC_006560.1 + 47265 0.66 0.908441
Target:  5'- cUCGGcGCCGcGGACccgaaagAGCGCCUGCGc -3'
miRNA:   3'- aAGCCcUGGUaCUUG-------UCGCGGAUGUc -5'
31048 5' -54.8 NC_006560.1 + 59260 0.66 0.902737
Target:  5'- cUCGGGGCCccgGAGCuccaGCCgACAGg -3'
miRNA:   3'- aAGCCCUGGua-CUUGucg-CGGaUGUC- -5'
31048 5' -54.8 NC_006560.1 + 135190 0.66 0.902737
Target:  5'- --aGGGcGCCGaaGACGGCGgCCUGCAGc -3'
miRNA:   3'- aagCCC-UGGUacUUGUCGC-GGAUGUC- -5'
31048 5' -54.8 NC_006560.1 + 15783 0.66 0.902737
Target:  5'- --gGGGGCCGgcaGGGCccGGCGCCgGCGGc -3'
miRNA:   3'- aagCCCUGGUa--CUUG--UCGCGGaUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.