miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31049 3' -60.5 NC_006560.1 + 119794 0.66 0.770994
Target:  5'- cCGCCcgacccCCGGCGGG-CgCUGUUCUGCg -3'
miRNA:   3'- -GCGGca----GGCCGCCUaG-GGCGAGAUGg -5'
31049 3' -60.5 NC_006560.1 + 101803 0.66 0.770994
Target:  5'- aCGCCGU--GGCGGAgcagCgCCGCg--ACCa -3'
miRNA:   3'- -GCGGCAggCCGCCUa---G-GGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 79216 0.66 0.770994
Target:  5'- aGCCGg-CGGUGaGAUCUCGCgcccGCCg -3'
miRNA:   3'- gCGGCagGCCGC-CUAGGGCGaga-UGG- -5'
31049 3' -60.5 NC_006560.1 + 103726 0.66 0.761954
Target:  5'- uCGCCGguucgCCGGgccaUGGcgCCCGUgcgGCCg -3'
miRNA:   3'- -GCGGCa----GGCC----GCCuaGGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 35278 0.66 0.761954
Target:  5'- gCGCCGggCGGCGGggCCCGgggu-CCg -3'
miRNA:   3'- -GCGGCagGCCGCCuaGGGCgagauGG- -5'
31049 3' -60.5 NC_006560.1 + 37537 0.66 0.761954
Target:  5'- gGCCGcgCgGGCGGccAUgCCGCUCgaGCUg -3'
miRNA:   3'- gCGGCa-GgCCGCC--UAgGGCGAGa-UGG- -5'
31049 3' -60.5 NC_006560.1 + 6452 0.66 0.761954
Target:  5'- cCGCCG-CCGGCcc-UCCuCGCUCcgcGCCc -3'
miRNA:   3'- -GCGGCaGGCCGccuAGG-GCGAGa--UGG- -5'
31049 3' -60.5 NC_006560.1 + 134671 0.66 0.761954
Target:  5'- cCGcCCG-CCGGCGGGgucgcggaCCCGCcaCUcGCCg -3'
miRNA:   3'- -GC-GGCaGGCCGCCUa-------GGGCGa-GA-UGG- -5'
31049 3' -60.5 NC_006560.1 + 49998 0.66 0.761044
Target:  5'- aCGCCG-CCGGacguccaCGGG-CCCGCg--GCCc -3'
miRNA:   3'- -GCGGCaGGCC-------GCCUaGGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 15786 0.66 0.758308
Target:  5'- gGCCGgcagggcccggcgCCGGCGGcgaCCGCg--GCCg -3'
miRNA:   3'- gCGGCa------------GGCCGCCuagGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 78062 0.66 0.752809
Target:  5'- aGCUGgcggCCGGCGGcgcggCCgcggCGCUCggggGCCu -3'
miRNA:   3'- gCGGCa---GGCCGCCua---GG----GCGAGa---UGG- -5'
31049 3' -60.5 NC_006560.1 + 48861 0.66 0.752809
Target:  5'- gCGCCaucagcGUCCGGgGGGcgCCCGuCUCcGCg -3'
miRNA:   3'- -GCGG------CAGGCCgCCUa-GGGC-GAGaUGg -5'
31049 3' -60.5 NC_006560.1 + 133227 0.66 0.752809
Target:  5'- gGCgGUCCGGCGuGAcgucaaCCCGCgacacGCCc -3'
miRNA:   3'- gCGgCAGGCCGC-CUa-----GGGCGaga--UGG- -5'
31049 3' -60.5 NC_006560.1 + 17894 0.66 0.752809
Target:  5'- gCGCC--CCGGCGGAgcgCuCCGCgcgcGCCg -3'
miRNA:   3'- -GCGGcaGGCCGCCUa--G-GGCGaga-UGG- -5'
31049 3' -60.5 NC_006560.1 + 76058 0.66 0.752809
Target:  5'- gGCCGcCgCGGCGGAaCUgGUUCgcACCg -3'
miRNA:   3'- gCGGCaG-GCCGCCUaGGgCGAGa-UGG- -5'
31049 3' -60.5 NC_006560.1 + 107987 0.66 0.752809
Target:  5'- gCGCCGggacgUCGGcCGGGUCgucgCCGCgCUGCg -3'
miRNA:   3'- -GCGGCa----GGCC-GCCUAG----GGCGaGAUGg -5'
31049 3' -60.5 NC_006560.1 + 118559 0.66 0.752809
Target:  5'- gGCUGUggagCCGGCGcucggucucgcuGGUCCCGCggcACCa -3'
miRNA:   3'- gCGGCA----GGCCGC------------CUAGGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 6396 0.66 0.752809
Target:  5'- cCGCCGacauaaagCCGGCGGcg-CCGCg--GCCg -3'
miRNA:   3'- -GCGGCa-------GGCCGCCuagGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 131618 0.66 0.749123
Target:  5'- cCGCCGgcCCGGCGGcggucgagcgcgCCCGC---GCCg -3'
miRNA:   3'- -GCGGCa-GGCCGCCua----------GGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 106650 0.66 0.743566
Target:  5'- cCGCCGagCGGgGGGUCgCGCcgUCgcCCg -3'
miRNA:   3'- -GCGGCagGCCgCCUAGgGCG--AGauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.