miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31049 3' -60.5 NC_006560.1 + 73868 0.66 0.743566
Target:  5'- gCGCUG-CUGGcCGGGgacgCCCGCg--ACCg -3'
miRNA:   3'- -GCGGCaGGCC-GCCUa---GGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 139154 0.66 0.743566
Target:  5'- gCGCagGUCCuuGCGGAUCguguCCGUgagCUGCCg -3'
miRNA:   3'- -GCGg-CAGGc-CGCCUAG----GGCGa--GAUGG- -5'
31049 3' -60.5 NC_006560.1 + 4056 0.66 0.743566
Target:  5'- gCGCCGgccgCGGCGGcguUCUCGCgc-GCCa -3'
miRNA:   3'- -GCGGCag--GCCGCCu--AGGGCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 23416 0.66 0.743566
Target:  5'- gCGCCGcCUGGCGG---CCGCcCUcGCCg -3'
miRNA:   3'- -GCGGCaGGCCGCCuagGGCGaGA-UGG- -5'
31049 3' -60.5 NC_006560.1 + 106650 0.66 0.743566
Target:  5'- cCGCCGagCGGgGGGUCgCGCcgUCgcCCg -3'
miRNA:   3'- -GCGGCagGCCgCCUAGgGCG--AGauGG- -5'
31049 3' -60.5 NC_006560.1 + 128403 0.66 0.743566
Target:  5'- -cUCGUUC-GCGGAgaucgccgCCCGCuUCUGCCg -3'
miRNA:   3'- gcGGCAGGcCGCCUa-------GGGCG-AGAUGG- -5'
31049 3' -60.5 NC_006560.1 + 125000 0.66 0.742637
Target:  5'- cCGCCGacgCCGGCGaccccguGGUCgCCGC-CcACCg -3'
miRNA:   3'- -GCGGCa--GGCCGC-------CUAG-GGCGaGaUGG- -5'
31049 3' -60.5 NC_006560.1 + 72618 0.66 0.741706
Target:  5'- cCGCCGggCCGcGCGGcacgccgcgagCCCGUUCgcgcgaggGCCg -3'
miRNA:   3'- -GCGGCa-GGC-CGCCua---------GGGCGAGa-------UGG- -5'
31049 3' -60.5 NC_006560.1 + 23577 0.66 0.739843
Target:  5'- cCGCCGUgcccgggCUGGCGGccgcgcgcgccgcgGUCCCGCcgCgcggcGCCg -3'
miRNA:   3'- -GCGGCA-------GGCCGCC--------------UAGGGCGa-Ga----UGG- -5'
31049 3' -60.5 NC_006560.1 + 41290 0.66 0.734234
Target:  5'- --aCGUCCgGGCGG-UCgCGCggCUGCCc -3'
miRNA:   3'- gcgGCAGG-CCGCCuAGgGCGa-GAUGG- -5'
31049 3' -60.5 NC_006560.1 + 69395 0.66 0.734234
Target:  5'- gCGCCuUCCGGCGcGUCCaggaCGC-CUGCg -3'
miRNA:   3'- -GCGGcAGGCCGCcUAGG----GCGaGAUGg -5'
31049 3' -60.5 NC_006560.1 + 33562 0.66 0.734234
Target:  5'- uGCCGagCCGGgGGggCgCCGC-CgcgGCCg -3'
miRNA:   3'- gCGGCa-GGCCgCCuaG-GGCGaGa--UGG- -5'
31049 3' -60.5 NC_006560.1 + 75899 0.66 0.727653
Target:  5'- cCGCCGauacguggcguucuUCCGGCGGGggcacgccgaguaCCUgggGCUCUGCg -3'
miRNA:   3'- -GCGGC--------------AGGCCGCCUa------------GGG---CGAGAUGg -5'
31049 3' -60.5 NC_006560.1 + 142434 0.66 0.724821
Target:  5'- cCGCCGcCCGGCGcGGcggCCgCGCg--GCCc -3'
miRNA:   3'- -GCGGCaGGCCGC-CUa--GG-GCGagaUGG- -5'
31049 3' -60.5 NC_006560.1 + 24332 0.66 0.724821
Target:  5'- gGCCGcUCCGcGCcucGGG-CCCGCUgcGCCg -3'
miRNA:   3'- gCGGC-AGGC-CG---CCUaGGGCGAgaUGG- -5'
31049 3' -60.5 NC_006560.1 + 12083 0.66 0.724821
Target:  5'- gGUCGcCCGGCGGGUaguggaacaGCUCcACCg -3'
miRNA:   3'- gCGGCaGGCCGCCUAggg------CGAGaUGG- -5'
31049 3' -60.5 NC_006560.1 + 29822 0.67 0.719137
Target:  5'- gCGCCGUCUGcaCGGAgcgcaucgacgagaCCCaGCUCUGCg -3'
miRNA:   3'- -GCGGCAGGCc-GCCUa-------------GGG-CGAGAUGg -5'
31049 3' -60.5 NC_006560.1 + 89700 0.67 0.715335
Target:  5'- aCGCCGaCgCGGCGGucgCgCCGCUCg--- -3'
miRNA:   3'- -GCGGCaG-GCCGCCua-G-GGCGAGaugg -5'
31049 3' -60.5 NC_006560.1 + 87894 0.67 0.715335
Target:  5'- gCGCCGUcCCGGCcGcgCCCcagGCggUACCa -3'
miRNA:   3'- -GCGGCA-GGCCGcCuaGGG---CGagAUGG- -5'
31049 3' -60.5 NC_006560.1 + 59085 0.67 0.715335
Target:  5'- aCGCCG-CCGGCGGc-CCCaGCcaacUgUACCu -3'
miRNA:   3'- -GCGGCaGGCCGCCuaGGG-CG----AgAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.