miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31049 5' -53 NC_006560.1 + 19644 0.66 0.971806
Target:  5'- cGUGUcgUCGUcGCCGGGCccgagGCGGCUGuCGUc -3'
miRNA:   3'- -UACA--AGUA-CGGCCUGa----UGUUGGC-GCA- -5'
31049 5' -53 NC_006560.1 + 99199 0.66 0.971806
Target:  5'- -gGcgCcUGCCGcGACggaaGCGACCGCGg -3'
miRNA:   3'- uaCaaGuACGGC-CUGa---UGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 68423 0.66 0.968809
Target:  5'- cUGgaggCG-GCgGGACUGCGcACCGCGg -3'
miRNA:   3'- uACaa--GUaCGgCCUGAUGU-UGGCGCa -5'
31049 5' -53 NC_006560.1 + 146991 0.66 0.968809
Target:  5'- -gGggCAUGgCGG-CUcGCGGCCGCGg -3'
miRNA:   3'- uaCaaGUACgGCCuGA-UGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 24402 0.66 0.968809
Target:  5'- cGUGcgCGUGCUGGugcuCUACGcGCCGCu- -3'
miRNA:   3'- -UACaaGUACGGCCu---GAUGU-UGGCGca -5'
31049 5' -53 NC_006560.1 + 94753 0.66 0.968809
Target:  5'- cUGUUCGgccGCCGGGCcgagcacuUugAGCgCGCGUu -3'
miRNA:   3'- uACAAGUa--CGGCCUG--------AugUUG-GCGCA- -5'
31049 5' -53 NC_006560.1 + 119134 0.66 0.965591
Target:  5'- -gGUUCGUgccGCCGGGCgACGACCucccgGCGc -3'
miRNA:   3'- uaCAAGUA---CGGCCUGaUGUUGG-----CGCa -5'
31049 5' -53 NC_006560.1 + 4636 0.66 0.965591
Target:  5'- -cGUcCAgggGCaCGGGCcGCGGCCGCGc -3'
miRNA:   3'- uaCAaGUa--CG-GCCUGaUGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 23230 0.66 0.962147
Target:  5'- cGUGgcCAUgaGCCGccGCUACGACCGCGc -3'
miRNA:   3'- -UACaaGUA--CGGCc-UGAUGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 38064 0.66 0.95809
Target:  5'- cAUGUUCucgGCCGGGCccCGggggugugucgguGCCGCGg -3'
miRNA:   3'- -UACAAGua-CGGCCUGauGU-------------UGGCGCa -5'
31049 5' -53 NC_006560.1 + 59586 0.67 0.9504
Target:  5'- -cGUggGUGCCGGGCgggagACGaguaccgaaACCGCGa -3'
miRNA:   3'- uaCAagUACGGCCUGa----UGU---------UGGCGCa -5'
31049 5' -53 NC_006560.1 + 78813 0.67 0.9504
Target:  5'- -gGUUCucGCCGGGCUc--GCCGCGa -3'
miRNA:   3'- uaCAAGuaCGGCCUGAuguUGGCGCa -5'
31049 5' -53 NC_006560.1 + 75997 0.67 0.945998
Target:  5'- -gGggCGUGCCGcuggaccuGGCcGCGGCCGCGg -3'
miRNA:   3'- uaCaaGUACGGC--------CUGaUGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 94468 0.67 0.941346
Target:  5'- cUGcgCGUGCUGGACcagGCccucgagcgGACCGCGg -3'
miRNA:   3'- uACaaGUACGGCCUGa--UG---------UUGGCGCa -5'
31049 5' -53 NC_006560.1 + 91213 0.67 0.941346
Target:  5'- ----aCGUGCUGGGCaACuacGCCGCGUu -3'
miRNA:   3'- uacaaGUACGGCCUGaUGu--UGGCGCA- -5'
31049 5' -53 NC_006560.1 + 85497 0.67 0.936442
Target:  5'- uUGggcUCGgggucGCCGGGCUGCugcCCGCGg -3'
miRNA:   3'- uACa--AGUa----CGGCCUGAUGuu-GGCGCa -5'
31049 5' -53 NC_006560.1 + 88674 0.68 0.925873
Target:  5'- cUGUgcg-GCgCGGGCUGCGcGCCGCGg -3'
miRNA:   3'- uACAaguaCG-GCCUGAUGU-UGGCGCa -5'
31049 5' -53 NC_006560.1 + 24308 0.68 0.925873
Target:  5'- -------aGCCGGGCUcCGGCCGCGc -3'
miRNA:   3'- uacaaguaCGGCCUGAuGUUGGCGCa -5'
31049 5' -53 NC_006560.1 + 81155 0.68 0.914285
Target:  5'- gGUG-UCggGCCGGuggaACUGCGggACCGCGg -3'
miRNA:   3'- -UACaAGuaCGGCC----UGAUGU--UGGCGCa -5'
31049 5' -53 NC_006560.1 + 15952 0.68 0.914285
Target:  5'- -gGUaCGUGUgGGAgUACGGCCGCa- -3'
miRNA:   3'- uaCAaGUACGgCCUgAUGUUGGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.