miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3105 3' -57.5 NC_001493.1 + 35452 0.66 0.832392
Target:  5'- cAACCCGAgCGGUCUCCgCUGgggcaGCACAu -3'
miRNA:   3'- uUUGGGCU-GCUAGGGG-GGUag---CGUGU- -5'
3105 3' -57.5 NC_001493.1 + 73126 0.66 0.832392
Target:  5'- uAACCUGAagaGcAUCCCUCCAUaUGCGCu -3'
miRNA:   3'- uUUGGGCUg--C-UAGGGGGGUA-GCGUGu -5'
3105 3' -57.5 NC_001493.1 + 89675 0.66 0.832392
Target:  5'- cAAGCUCGucACGuaugCCCCCCAUC-CACc -3'
miRNA:   3'- -UUUGGGC--UGCua--GGGGGGUAGcGUGu -5'
3105 3' -57.5 NC_001493.1 + 47608 0.66 0.831556
Target:  5'- --gUCC-ACGGucaugccUCCCCCCAUCGaCGCGa -3'
miRNA:   3'- uuuGGGcUGCU-------AGGGGGGUAGC-GUGU- -5'
3105 3' -57.5 NC_001493.1 + 82139 0.66 0.831556
Target:  5'- --gUCCGAacCGAUCCCCCacaguuuCAUgGCGCGu -3'
miRNA:   3'- uuuGGGCU--GCUAGGGGG-------GUAgCGUGU- -5'
3105 3' -57.5 NC_001493.1 + 9950 0.66 0.823949
Target:  5'- cGAGCUCGACG-UCCCCgCGguucgagCGCugGu -3'
miRNA:   3'- -UUUGGGCUGCuAGGGGgGUa------GCGugU- -5'
3105 3' -57.5 NC_001493.1 + 7851 0.66 0.823949
Target:  5'- cAACCCGugauCGAUCCCCUCc-CGCcCGg -3'
miRNA:   3'- uUUGGGCu---GCUAGGGGGGuaGCGuGU- -5'
3105 3' -57.5 NC_001493.1 + 125504 0.66 0.823949
Target:  5'- cGAGCUCGACG-UCCCCgCGguucgagCGCugGu -3'
miRNA:   3'- -UUUGGGCUGCuAGGGGgGUa------GCGugU- -5'
3105 3' -57.5 NC_001493.1 + 123405 0.66 0.823949
Target:  5'- cAACCCGugauCGAUCCCCUCc-CGCcCGg -3'
miRNA:   3'- uUUGGGCu---GCUAGGGGGGuaGCGuGU- -5'
3105 3' -57.5 NC_001493.1 + 58670 0.66 0.823949
Target:  5'- cGACCCauAUGAUCCCCCCGcaacagcCGCAgAg -3'
miRNA:   3'- uUUGGGc-UGCUAGGGGGGUa------GCGUgU- -5'
3105 3' -57.5 NC_001493.1 + 51368 0.66 0.815331
Target:  5'- --uCCCGugGcgguccagGUCCCCCuCGUCGCc-- -3'
miRNA:   3'- uuuGGGCugC--------UAGGGGG-GUAGCGugu -5'
3105 3' -57.5 NC_001493.1 + 81951 0.66 0.815331
Target:  5'- --cCCCGGUGAUgaUCUCCGUCGCGCGa -3'
miRNA:   3'- uuuGGGCUGCUAg-GGGGGUAGCGUGU- -5'
3105 3' -57.5 NC_001493.1 + 113902 0.66 0.815331
Target:  5'- -uACCCGACGGcagUCCCCgCgCAUCuccugGCACc -3'
miRNA:   3'- uuUGGGCUGCU---AGGGG-G-GUAG-----CGUGu -5'
3105 3' -57.5 NC_001493.1 + 109344 0.66 0.806546
Target:  5'- -cGCCCG-CGcUCUCCcgggcuccauaCCAUCGCGCAc -3'
miRNA:   3'- uuUGGGCuGCuAGGGG-----------GGUAGCGUGU- -5'
3105 3' -57.5 NC_001493.1 + 49257 0.66 0.797602
Target:  5'- uGAGCCCG-CGGcguauuaucucUCCCUCUAUCuGCACc -3'
miRNA:   3'- -UUUGGGCuGCU-----------AGGGGGGUAG-CGUGu -5'
3105 3' -57.5 NC_001493.1 + 108952 0.66 0.788507
Target:  5'- cAGGCCCGGCaccUCCUCCCGUgaucggagcCGCGCc -3'
miRNA:   3'- -UUUGGGCUGcu-AGGGGGGUA---------GCGUGu -5'
3105 3' -57.5 NC_001493.1 + 44515 0.66 0.788507
Target:  5'- aGAACCCGguGCGA-CCCagcgacuuaCUCAUCGCACc -3'
miRNA:   3'- -UUUGGGC--UGCUaGGG---------GGGUAGCGUGu -5'
3105 3' -57.5 NC_001493.1 + 78586 0.67 0.769902
Target:  5'- cGGACCCGugGGUCaaCCaaaaAUCgGCACAc -3'
miRNA:   3'- -UUUGGGCugCUAGggGGg---UAG-CGUGU- -5'
3105 3' -57.5 NC_001493.1 + 27765 0.67 0.760409
Target:  5'- cGAGCCCGcGCgGGUCCCCUCGagGCGu- -3'
miRNA:   3'- -UUUGGGC-UG-CUAGGGGGGUagCGUgu -5'
3105 3' -57.5 NC_001493.1 + 128761 0.67 0.750803
Target:  5'- gAGACCCGACaGggCCCUCUA-CGUACc -3'
miRNA:   3'- -UUUGGGCUG-CuaGGGGGGUaGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.