miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3105 5' -58.5 NC_001493.1 + 14872 0.66 0.798857
Target:  5'- cAUCACcgugGGUgCUCucgucgagacgcGAGGGGCCCCggaGGg -3'
miRNA:   3'- -UAGUG----CCAgGAG------------UUCCUCGGGGag-CC- -5'
3105 5' -58.5 NC_001493.1 + 121039 0.66 0.798857
Target:  5'- gGUCACGGUgCC-CAcGGGuGCCCC-CGc -3'
miRNA:   3'- -UAGUGCCA-GGaGU-UCCuCGGGGaGCc -5'
3105 5' -58.5 NC_001493.1 + 130426 0.66 0.798857
Target:  5'- cAUCACcgugGGUgCUCucgucgagacgcGAGGGGCCCCggaGGg -3'
miRNA:   3'- -UAGUG----CCAgGAG------------UUCCUCGGGGag-CC- -5'
3105 5' -58.5 NC_001493.1 + 27600 0.66 0.798857
Target:  5'- -aC-CGGacgCCUCGAGGGGaCCCgcgCGGg -3'
miRNA:   3'- uaGuGCCa--GGAGUUCCUCgGGGa--GCC- -5'
3105 5' -58.5 NC_001493.1 + 119191 0.66 0.789897
Target:  5'- -aC-CGGUUCgcaCAGGGGcgcGCUCCUCGGg -3'
miRNA:   3'- uaGuGCCAGGa--GUUCCU---CGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 3637 0.66 0.789897
Target:  5'- -aC-CGGUUCgcaCAGGGGcgcGCUCCUCGGg -3'
miRNA:   3'- uaGuGCCAGGa--GUUCCU---CGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 28945 0.66 0.771568
Target:  5'- uUCuuGGUUCU--GGcGAGCUCCUCGGu -3'
miRNA:   3'- uAGugCCAGGAguUC-CUCGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 84859 0.66 0.771568
Target:  5'- gGUCGCugaagagauuGGUUgaCGAGGGGgUCCUCGGg -3'
miRNA:   3'- -UAGUG----------CCAGgaGUUCCUCgGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 17630 0.66 0.770639
Target:  5'- -cCAC-GUCCUCAAGGuuaucaaGGCCCgUgGGa -3'
miRNA:   3'- uaGUGcCAGGAGUUCC-------UCGGGgAgCC- -5'
3105 5' -58.5 NC_001493.1 + 133185 0.66 0.770639
Target:  5'- -cCAC-GUCCUCAAGGuuaucaaGGCCCgUgGGa -3'
miRNA:   3'- uaGUGcCAGGAGUUCC-------UCGGGgAgCC- -5'
3105 5' -58.5 NC_001493.1 + 30056 0.66 0.762217
Target:  5'- --aGCGGcccgcUCCgcguaCAGGGgaaugAGCCCCUCGGu -3'
miRNA:   3'- uagUGCC-----AGGa----GUUCC-----UCGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 16705 0.67 0.752752
Target:  5'- -cCACGGgCCUCucgcccuGGGGCaCCCUCa- -3'
miRNA:   3'- uaGUGCCaGGAGuu-----CCUCG-GGGAGcc -5'
3105 5' -58.5 NC_001493.1 + 125929 0.67 0.723768
Target:  5'- aGUCACGGa-CUCGAGcGGGCaCCCUCc- -3'
miRNA:   3'- -UAGUGCCagGAGUUC-CUCG-GGGAGcc -5'
3105 5' -58.5 NC_001493.1 + 10375 0.67 0.723768
Target:  5'- aGUCACGGa-CUCGAGcGGGCaCCCUCc- -3'
miRNA:   3'- -UAGUGCCagGAGUUC-CUCG-GGGAGcc -5'
3105 5' -58.5 NC_001493.1 + 119013 0.67 0.71394
Target:  5'- -aCugGcGUCC-CGAGGAgcGCCCCaCGGa -3'
miRNA:   3'- uaGugC-CAGGaGUUCCU--CGGGGaGCC- -5'
3105 5' -58.5 NC_001493.1 + 3459 0.67 0.71394
Target:  5'- -aCugGcGUCC-CGAGGAgcGCCCCaCGGa -3'
miRNA:   3'- uaGugC-CAGGaGUUCCU--CGGGGaGCC- -5'
3105 5' -58.5 NC_001493.1 + 84951 0.68 0.684082
Target:  5'- gAUgACGcGUUgaUCGAGGGGCUCCUCGa -3'
miRNA:   3'- -UAgUGC-CAGg-AGUUCCUCGGGGAGCc -5'
3105 5' -58.5 NC_001493.1 + 2069 0.68 0.64372
Target:  5'- cUCGUGGccacUCCUCAGGGuGCUCUUUGGg -3'
miRNA:   3'- uAGUGCC----AGGAGUUCCuCGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 117624 0.68 0.64372
Target:  5'- cUCGUGGccacUCCUCAGGGuGCUCUUUGGg -3'
miRNA:   3'- uAGUGCC----AGGAGUUCCuCGGGGAGCC- -5'
3105 5' -58.5 NC_001493.1 + 36389 0.69 0.583053
Target:  5'- -cCGCGGUCuuaggCUCGGGGcgGGCCCuCUUGGu -3'
miRNA:   3'- uaGUGCCAG-----GAGUUCC--UCGGG-GAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.