miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31050 3' -58.3 NC_006560.1 + 33493 0.66 0.854194
Target:  5'- cCGCCGGcagggaggCGGGcgC-CGGCCCGgGg -3'
miRNA:   3'- -GCGGUCaa------GCCCaaGaGCCGGGUgCg -5'
31050 3' -58.3 NC_006560.1 + 74193 0.66 0.854194
Target:  5'- aGCgGGUggugCGGcGgagCUCGGgCCugGCc -3'
miRNA:   3'- gCGgUCAa---GCC-Caa-GAGCCgGGugCG- -5'
31050 3' -58.3 NC_006560.1 + 146974 0.66 0.854194
Target:  5'- gGCCuGggCGGGUgggCggggcauggCGGCUCGCGg -3'
miRNA:   3'- gCGGuCaaGCCCAa--Ga--------GCCGGGUGCg -5'
31050 3' -58.3 NC_006560.1 + 26834 0.66 0.854194
Target:  5'- aCGCCGGggaccCGGGgcg-CGGCCgGcCGCc -3'
miRNA:   3'- -GCGGUCaa---GCCCaagaGCCGGgU-GCG- -5'
31050 3' -58.3 NC_006560.1 + 69573 0.66 0.854194
Target:  5'- gCGgCGGUUCGGcgcGggC-CGGCCCAgccCGCu -3'
miRNA:   3'- -GCgGUCAAGCC---CaaGaGCCGGGU---GCG- -5'
31050 3' -58.3 NC_006560.1 + 134779 0.66 0.854194
Target:  5'- gCGCgCAGggUCGGGgcggcgcgCUccaCGGCCC-CGCc -3'
miRNA:   3'- -GCG-GUCa-AGCCCaa------GA---GCCGGGuGCG- -5'
31050 3' -58.3 NC_006560.1 + 23974 0.66 0.852665
Target:  5'- cCGCCGGcgCGcaagaagagC-CGGCCCGCGCc -3'
miRNA:   3'- -GCGGUCaaGCccaa-----GaGCCGGGUGCG- -5'
31050 3' -58.3 NC_006560.1 + 16880 0.66 0.838574
Target:  5'- gGCCAGgaccUCGGGggcgUUCGugucgaccguGCCCGCGa -3'
miRNA:   3'- gCGGUCa---AGCCCaa--GAGC----------CGGGUGCg -5'
31050 3' -58.3 NC_006560.1 + 54235 0.66 0.838574
Target:  5'- uCGcCCGGggaGGGcgCcCGGCCC-CGCg -3'
miRNA:   3'- -GC-GGUCaagCCCaaGaGCCGGGuGCG- -5'
31050 3' -58.3 NC_006560.1 + 74717 0.66 0.838574
Target:  5'- gGCCAGUacCGGG----CGGCCCugGa -3'
miRNA:   3'- gCGGUCAa-GCCCaagaGCCGGGugCg -5'
31050 3' -58.3 NC_006560.1 + 108170 0.66 0.838574
Target:  5'- cCGCCAGgaaGGGcucgUCgaucggCGGCaCCGCGg -3'
miRNA:   3'- -GCGGUCaagCCCa---AGa-----GCCG-GGUGCg -5'
31050 3' -58.3 NC_006560.1 + 116240 0.66 0.838574
Target:  5'- gCGuCCgAGUUCGGGgcgagggUCUCGGUgagguugucgagCUGCGCc -3'
miRNA:   3'- -GC-GG-UCAAGCCCa------AGAGCCG------------GGUGCG- -5'
31050 3' -58.3 NC_006560.1 + 50001 0.66 0.838574
Target:  5'- cCGCCGGacguccaCGGGcccgCGGCCCcCGCc -3'
miRNA:   3'- -GCGGUCaa-----GCCCaagaGCCGGGuGCG- -5'
31050 3' -58.3 NC_006560.1 + 115875 0.66 0.838574
Target:  5'- gCGCCcGUggccCGGGUgugcacguUCgaCGGCCC-CGCg -3'
miRNA:   3'- -GCGGuCAa---GCCCA--------AGa-GCCGGGuGCG- -5'
31050 3' -58.3 NC_006560.1 + 133412 0.66 0.838574
Target:  5'- uCGCCGGagcUCGGGgcggccauggUCgcccCGGCCgaccCACGCg -3'
miRNA:   3'- -GCGGUCa--AGCCCa---------AGa---GCCGG----GUGCG- -5'
31050 3' -58.3 NC_006560.1 + 45758 0.66 0.835363
Target:  5'- cCGCCAGgggUUGGcGUgggggggcgcgggCUCGGUCCGC-Cg -3'
miRNA:   3'- -GCGGUCa--AGCC-CAa------------GAGCCGGGUGcG- -5'
31050 3' -58.3 NC_006560.1 + 109738 0.66 0.831309
Target:  5'- gGCCGGg-CGGGggucccaggggacaCUCGGCC-GCGCa -3'
miRNA:   3'- gCGGUCaaGCCCaa------------GAGCCGGgUGCG- -5'
31050 3' -58.3 NC_006560.1 + 149143 0.66 0.830493
Target:  5'- cCGCCgcGGcgCGGGg---CGGCCCccaggggcgGCGCg -3'
miRNA:   3'- -GCGG--UCaaGCCCaagaGCCGGG---------UGCG- -5'
31050 3' -58.3 NC_006560.1 + 56742 0.66 0.830493
Target:  5'- aCGCCGGa-CGGGguuUCUCGuCgCGCGCu -3'
miRNA:   3'- -GCGGUCaaGCCCa--AGAGCcGgGUGCG- -5'
31050 3' -58.3 NC_006560.1 + 11364 0.66 0.830493
Target:  5'- uGCgGGc-CGGGUg--CGGCCgGCGCc -3'
miRNA:   3'- gCGgUCaaGCCCAagaGCCGGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.