miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31050 5' -55.9 NC_006560.1 + 27563 0.66 0.91868
Target:  5'- -cGCGcGCgcccGcCGGAAgcUGAGGCCGCCGg -3'
miRNA:   3'- gaCGCuCGa---C-GUCUU--GCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 74193 0.66 0.91868
Target:  5'- -aGCGGGUggugcgGCGGAGCucGGGCCugGCCGa -3'
miRNA:   3'- gaCGCUCGa-----CGUCUUGc-UCUGG--UGGC- -5'
31050 5' -55.9 NC_006560.1 + 26790 0.66 0.91868
Target:  5'- -cGCgGAGgaGCcggggAGAGCGAGACCGaCGg -3'
miRNA:   3'- gaCG-CUCgaCG-----UCUUGCUCUGGUgGC- -5'
31050 5' -55.9 NC_006560.1 + 49359 0.66 0.91868
Target:  5'- cCUGac-GCUGCucgGGGACGAcGACCACgCGg -3'
miRNA:   3'- -GACgcuCGACG---UCUUGCU-CUGGUG-GC- -5'
31050 5' -55.9 NC_006560.1 + 76019 0.66 0.91868
Target:  5'- -cGCG-GCcGCGGAGCG-GACgACCc -3'
miRNA:   3'- gaCGCuCGaCGUCUUGCuCUGgUGGc -5'
31050 5' -55.9 NC_006560.1 + 83525 0.66 0.91868
Target:  5'- -cGCGGGCgcgcgcccGCGGAGacgugGGGACaCGCCGa -3'
miRNA:   3'- gaCGCUCGa-------CGUCUUg----CUCUG-GUGGC- -5'
31050 5' -55.9 NC_006560.1 + 93339 0.66 0.91868
Target:  5'- -gGCGGGUUGgcCGGAgcccccACGAGACgCGCCu -3'
miRNA:   3'- gaCGCUCGAC--GUCU------UGCUCUG-GUGGc -5'
31050 5' -55.9 NC_006560.1 + 134587 0.66 0.91868
Target:  5'- gUGCGAcagccGCUGCAuGGGCGAGucgaagaggaGCCggucGCCGg -3'
miRNA:   3'- gACGCU-----CGACGU-CUUGCUC----------UGG----UGGC- -5'
31050 5' -55.9 NC_006560.1 + 149556 0.66 0.91868
Target:  5'- -gGCGAGaccacccaCGGAcccCGGGACCACCGa -3'
miRNA:   3'- gaCGCUCgac-----GUCUu--GCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 44335 0.66 0.91868
Target:  5'- uCUGCG-GCUGgGGGGCGc-GCCcCCGg -3'
miRNA:   3'- -GACGCuCGACgUCUUGCucUGGuGGC- -5'
31050 5' -55.9 NC_006560.1 + 26414 0.66 0.91811
Target:  5'- -gGCGuGCagGCcuagugaagaucgGGGGCGGGGCUGCCGg -3'
miRNA:   3'- gaCGCuCGa-CG-------------UCUUGCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 27218 0.66 0.91287
Target:  5'- -cGCGGG--GCGGGGcCGGGACCGCgGg -3'
miRNA:   3'- gaCGCUCgaCGUCUU-GCUCUGGUGgC- -5'
31050 5' -55.9 NC_006560.1 + 116801 0.66 0.91287
Target:  5'- -cGUaGAGCUcGgGGGccAUGAGGCCGCCGu -3'
miRNA:   3'- gaCG-CUCGA-CgUCU--UGCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 116532 0.66 0.91287
Target:  5'- -gGCGGGCgGC-GAugGcGACgGCCGa -3'
miRNA:   3'- gaCGCUCGaCGuCUugCuCUGgUGGC- -5'
31050 5' -55.9 NC_006560.1 + 8086 0.66 0.91287
Target:  5'- -cGCGuucGGCUGCGGcagccccGCGccGACCGCCGc -3'
miRNA:   3'- gaCGC---UCGACGUCu------UGCu-CUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 149449 0.66 0.911081
Target:  5'- -aGCGAGCUccggagaucccaucGCAG-GCGgcAGACgGCCGg -3'
miRNA:   3'- gaCGCUCGA--------------CGUCuUGC--UCUGgUGGC- -5'
31050 5' -55.9 NC_006560.1 + 7717 0.66 0.908662
Target:  5'- uCUGCGAGCagccgucugcgcaccUGCAGAcccugccGCucGAgCACCGg -3'
miRNA:   3'- -GACGCUCG---------------ACGUCU-------UGcuCUgGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 74308 0.66 0.906823
Target:  5'- -cGCG-GCcgGCgGGGACGAcGCCGCCGc -3'
miRNA:   3'- gaCGCuCGa-CG-UCUUGCUcUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 131231 0.66 0.906823
Target:  5'- -cGCcgGGGCUGCGGcuGCuGGACCcACCGg -3'
miRNA:   3'- gaCG--CUCGACGUCu-UGcUCUGG-UGGC- -5'
31050 5' -55.9 NC_006560.1 + 47023 0.66 0.906823
Target:  5'- -cGCGGGCgcucGCAGGcggcGCGccacGACCGCCc -3'
miRNA:   3'- gaCGCUCGa---CGUCU----UGCu---CUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.