miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31050 5' -55.9 NC_006560.1 + 89966 1.1 0.002558
Target:  5'- cCUGCGAGCUGCAGAACGAGACCACCGg -3'
miRNA:   3'- -GACGCUCGACGUCUUGCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 52613 0.82 0.179974
Target:  5'- -gGCGGGCUGCGGAucccCGAGAgcCCGCCGg -3'
miRNA:   3'- gaCGCUCGACGUCUu---GCUCU--GGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 130268 0.81 0.216427
Target:  5'- -aGCGAGCUGCAGGccuucuacgggcccgGCGAGaucucgGCCGCCGg -3'
miRNA:   3'- gaCGCUCGACGUCU---------------UGCUC------UGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 97573 0.8 0.225098
Target:  5'- -cGCGAGCUGacgcuguGGAACGAGGCCcGCCGg -3'
miRNA:   3'- gaCGCUCGACg------UCUUGCUCUGG-UGGC- -5'
31050 5' -55.9 NC_006560.1 + 80813 0.79 0.266541
Target:  5'- -aGgGGGCUGCGGGGCGGGGCgCGCCc -3'
miRNA:   3'- gaCgCUCGACGUCUUGCUCUG-GUGGc -5'
31050 5' -55.9 NC_006560.1 + 10095 0.78 0.306799
Target:  5'- -gGCGAGCgGCAcGAugGAGACCGCgGu -3'
miRNA:   3'- gaCGCUCGaCGU-CUugCUCUGGUGgC- -5'
31050 5' -55.9 NC_006560.1 + 118211 0.77 0.336132
Target:  5'- -aGCGGGCcgUGCGGGACGuGGCCcGCCGg -3'
miRNA:   3'- gaCGCUCG--ACGUCUUGCuCUGG-UGGC- -5'
31050 5' -55.9 NC_006560.1 + 129069 0.76 0.400735
Target:  5'- -cGCGAGCUGCGcGGCGGcGACC-CCGg -3'
miRNA:   3'- gaCGCUCGACGUcUUGCU-CUGGuGGC- -5'
31050 5' -55.9 NC_006560.1 + 77272 0.76 0.400735
Target:  5'- cCUG-GAGCUGC---GCGAGGCCACCa -3'
miRNA:   3'- -GACgCUCGACGucuUGCUCUGGUGGc -5'
31050 5' -55.9 NC_006560.1 + 73416 0.74 0.472715
Target:  5'- -gGCGAGCUcGCGGAGCuGGAgCGCCa -3'
miRNA:   3'- gaCGCUCGA-CGUCUUGcUCUgGUGGc -5'
31050 5' -55.9 NC_006560.1 + 146998 0.74 0.472715
Target:  5'- -gGCG-GCUcGCGGccGCGGGGCCACCGg -3'
miRNA:   3'- gaCGCuCGA-CGUCu-UGCUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 74264 0.74 0.505229
Target:  5'- -cGCGAGCUcgAGAGCGAGgcggcguucgagcccGCCGCCGa -3'
miRNA:   3'- gaCGCUCGAcgUCUUGCUC---------------UGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 16697 0.73 0.529736
Target:  5'- -cGCGuGCUGCGGAAacucgucCGGGugCACCu -3'
miRNA:   3'- gaCGCuCGACGUCUU-------GCUCugGUGGc -5'
31050 5' -55.9 NC_006560.1 + 76315 0.73 0.530726
Target:  5'- -aGCGAcGCgcGCAGAGCGAGGCCgagaGCCu -3'
miRNA:   3'- gaCGCU-CGa-CGUCUUGCUCUGG----UGGc -5'
31050 5' -55.9 NC_006560.1 + 14376 0.73 0.530726
Target:  5'- -gGCGAgGCgagGCGGGGCGAcGACCgACCGa -3'
miRNA:   3'- gaCGCU-CGa--CGUCUUGCU-CUGG-UGGC- -5'
31050 5' -55.9 NC_006560.1 + 39319 0.73 0.530726
Target:  5'- -gGCgGGGCgGUGGGGCGGGGCCGCCc -3'
miRNA:   3'- gaCG-CUCGaCGUCUUGCUCUGGUGGc -5'
31050 5' -55.9 NC_006560.1 + 130797 0.73 0.530726
Target:  5'- -gGCGGuGCUGCGGccGCGGGGCCACgCGc -3'
miRNA:   3'- gaCGCU-CGACGUCu-UGCUCUGGUG-GC- -5'
31050 5' -55.9 NC_006560.1 + 27633 0.73 0.550652
Target:  5'- -gGCGGGCgcggccgggcGCGGGGCGcGGCCGCCGc -3'
miRNA:   3'- gaCGCUCGa---------CGUCUUGCuCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 96244 0.73 0.560702
Target:  5'- -cGCGAcGCUGCGGGA--AGACCugCGg -3'
miRNA:   3'- gaCGCU-CGACGUCUUgcUCUGGugGC- -5'
31050 5' -55.9 NC_006560.1 + 104532 0.73 0.560702
Target:  5'- --cCGAGCUGCuGGACGAGACgGgCGa -3'
miRNA:   3'- gacGCUCGACGuCUUGCUCUGgUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.