miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31050 5' -55.9 NC_006560.1 + 2263 0.66 0.887275
Target:  5'- -cGCGcaGGC-GCGGuGCGAGugCGCCu -3'
miRNA:   3'- gaCGC--UCGaCGUCuUGCUCugGUGGc -5'
31050 5' -55.9 NC_006560.1 + 2879 0.72 0.570802
Target:  5'- -aGCGcGGCgaGCAGGAaggaGAGGCCGCCGc -3'
miRNA:   3'- gaCGC-UCGa-CGUCUUg---CUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 2923 0.71 0.673017
Target:  5'- -gGCGGGCgggGCGGGG-GAGacGCCGCCGa -3'
miRNA:   3'- gaCGCUCGa--CGUCUUgCUC--UGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 3091 0.71 0.632073
Target:  5'- -gGCGGGCcGCAGcgcgcggccAGCGAGGCCAgCGc -3'
miRNA:   3'- gaCGCUCGaCGUC---------UUGCUCUGGUgGC- -5'
31050 5' -55.9 NC_006560.1 + 3583 0.7 0.733244
Target:  5'- -cGCGGGCUGCGGGccagcagcgGCGcGGCggCGCCGg -3'
miRNA:   3'- gaCGCUCGACGUCU---------UGCuCUG--GUGGC- -5'
31050 5' -55.9 NC_006560.1 + 3756 0.71 0.673017
Target:  5'- -cGCGGGCgcgGCGGcgccgcgcGGCGGGACCGCgGc -3'
miRNA:   3'- gaCGCUCGa--CGUC--------UUGCUCUGGUGgC- -5'
31050 5' -55.9 NC_006560.1 + 5176 0.68 0.833998
Target:  5'- -gGCGGGCcGCGGcGACGGcGGCC-CCGa -3'
miRNA:   3'- gaCGCUCGaCGUC-UUGCU-CUGGuGGC- -5'
31050 5' -55.9 NC_006560.1 + 7717 0.66 0.908662
Target:  5'- uCUGCGAGCagccgucugcgcaccUGCAGAcccugccGCucGAgCACCGg -3'
miRNA:   3'- -GACGCUCG---------------ACGUCU-------UGcuCUgGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 8086 0.66 0.91287
Target:  5'- -cGCGuucGGCUGCGGcagccccGCGccGACCGCCGc -3'
miRNA:   3'- gaCGC---UCGACGUCu------UGCu-CUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 9599 0.68 0.808267
Target:  5'- -gGCGAGCggagcGCGGGGCGcGGCCcCUGg -3'
miRNA:   3'- gaCGCUCGa----CGUCUUGCuCUGGuGGC- -5'
31050 5' -55.9 NC_006560.1 + 9804 0.67 0.879592
Target:  5'- -cGCgGAGCUGCAGGuuaACGguGGGCCcguaccaccccagGCCGg -3'
miRNA:   3'- gaCG-CUCGACGUCU---UGC--UCUGG-------------UGGC- -5'
31050 5' -55.9 NC_006560.1 + 10095 0.78 0.306799
Target:  5'- -gGCGAGCgGCAcGAugGAGACCGCgGu -3'
miRNA:   3'- gaCGCUCGaCGU-CUugCUCUGGUGgC- -5'
31050 5' -55.9 NC_006560.1 + 10290 0.68 0.825595
Target:  5'- -cGCGAGaggggGCGGGccGCcgGGGACCGCCGc -3'
miRNA:   3'- gaCGCUCga---CGUCU--UG--CUCUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 11363 0.7 0.703403
Target:  5'- aUGCGGGCcgggUGCGGccggcgccGACGAcACCGCCGa -3'
miRNA:   3'- gACGCUCG----ACGUC--------UUGCUcUGGUGGC- -5'
31050 5' -55.9 NC_006560.1 + 11928 0.69 0.771755
Target:  5'- -cGCGGGCccGCAGGA-GGGGCCGgCGg -3'
miRNA:   3'- gaCGCUCGa-CGUCUUgCUCUGGUgGC- -5'
31050 5' -55.9 NC_006560.1 + 14376 0.73 0.530726
Target:  5'- -gGCGAgGCgagGCGGGGCGAcGACCgACCGa -3'
miRNA:   3'- gaCGCU-CGa--CGUCUUGCU-CUGG-UGGC- -5'
31050 5' -55.9 NC_006560.1 + 14841 0.67 0.873106
Target:  5'- gUGCG-GCggGgGGAGCGuGGCgGCCGg -3'
miRNA:   3'- gACGCuCGa-CgUCUUGCuCUGgUGGC- -5'
31050 5' -55.9 NC_006560.1 + 15660 0.66 0.894022
Target:  5'- -aGCGGGUUcGCGGc-CGAGACCcaggcgGCCGg -3'
miRNA:   3'- gaCGCUCGA-CGUCuuGCUCUGG------UGGC- -5'
31050 5' -55.9 NC_006560.1 + 16697 0.73 0.529736
Target:  5'- -cGCGuGCUGCGGAAacucgucCGGGugCACCu -3'
miRNA:   3'- gaCGCuCGACGUCUU-------GCUCugGUGGc -5'
31050 5' -55.9 NC_006560.1 + 18418 0.67 0.865694
Target:  5'- cCUGCG-GCUGCG--ACccGGCCGCCGc -3'
miRNA:   3'- -GACGCuCGACGUcuUGcuCUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.