miRNA display CGI


Results 1 - 20 of 630 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31051 5' -68.2 NC_006560.1 + 132583 0.65 0.414324
Target:  5'- uGGggGCGUccgacgcccaccagGCCGCgaGGCCGGC-GCGGa -3'
miRNA:   3'- -CCgaCGCG--------------CGGCG--CCGGCCGcCGCCg -5'
31051 5' -68.2 NC_006560.1 + 32114 0.66 0.408738
Target:  5'- aGGCgggGCaGCGagcggggcCCGgGGCCGGUcacggccgGGCGGg -3'
miRNA:   3'- -CCGa--CG-CGC--------GGCgCCGGCCG--------CCGCCg -5'
31051 5' -68.2 NC_006560.1 + 101332 0.66 0.408738
Target:  5'- gGGCgcgacgGCGCGucCCGCcugGGCgucgaGGCacagGGCGGCg -3'
miRNA:   3'- -CCGa-----CGCGC--GGCG---CCGg----CCG----CCGCCG- -5'
31051 5' -68.2 NC_006560.1 + 101845 0.66 0.408738
Target:  5'- aGCgcccCGCGCUcguaGCGGCCGcccGCGGCcGCg -3'
miRNA:   3'- cCGac--GCGCGG----CGCCGGC---CGCCGcCG- -5'
31051 5' -68.2 NC_006560.1 + 68993 0.66 0.408738
Target:  5'- cGCUgaugucGCGCGuCCGCa-CCGacGCGGCGGUg -3'
miRNA:   3'- cCGA------CGCGC-GGCGccGGC--CGCCGCCG- -5'
31051 5' -68.2 NC_006560.1 + 79001 0.66 0.408738
Target:  5'- cGCgccccCGaCGCCcuccCGGCCGGCGcCGGCg -3'
miRNA:   3'- cCGac---GC-GCGGc---GCCGGCCGCcGCCG- -5'
31051 5' -68.2 NC_006560.1 + 113446 0.66 0.408738
Target:  5'- cGGCgcuccUGUGCGCCGCGGCgccCGacGCgGGCGcCa -3'
miRNA:   3'- -CCG-----ACGCGCGGCGCCG---GC--CG-CCGCcG- -5'
31051 5' -68.2 NC_006560.1 + 134869 0.66 0.408738
Target:  5'- cGCUGCGUcacuucccccucGCgG-GGCCGGCGcaucacCGGCa -3'
miRNA:   3'- cCGACGCG------------CGgCgCCGGCCGCc-----GCCG- -5'
31051 5' -68.2 NC_006560.1 + 122910 0.66 0.407943
Target:  5'- gGGCgacUGCgcccuccGCGCCGgGGCCGcGCugaacguccGCGGCc -3'
miRNA:   3'- -CCG---ACG-------CGCGGCgCCGGC-CGc--------CGCCG- -5'
31051 5' -68.2 NC_006560.1 + 26938 0.66 0.407943
Target:  5'- aGGCcGCgGgGCCGCggaGGCCggggaaccccacaGGCGG-GGCg -3'
miRNA:   3'- -CCGaCG-CgCGGCG---CCGG-------------CCGCCgCCG- -5'
31051 5' -68.2 NC_006560.1 + 9570 0.66 0.405567
Target:  5'- gGGC--CGCGCCGaagacgcccacgaGGCgCGGCGaGCGGa -3'
miRNA:   3'- -CCGacGCGCGGCg------------CCG-GCCGC-CGCCg -5'
31051 5' -68.2 NC_006560.1 + 4512 0.66 0.400839
Target:  5'- cGGCUGuCGCccagGCCGCcguagagcacGcGCCccgggGGCGGgGGCu -3'
miRNA:   3'- -CCGAC-GCG----CGGCG----------C-CGG-----CCGCCgCCG- -5'
31051 5' -68.2 NC_006560.1 + 16220 0.66 0.400839
Target:  5'- gGGCccGCGgGCC-CGGCaucgucgaGGCGGgGGg -3'
miRNA:   3'- -CCGa-CGCgCGGcGCCGg-------CCGCCgCCg -5'
31051 5' -68.2 NC_006560.1 + 25313 0.66 0.400839
Target:  5'- cGCcGcCGCGCCGCgcgugcgcugGGCCGcCGGCcGCg -3'
miRNA:   3'- cCGaC-GCGCGGCG----------CCGGCcGCCGcCG- -5'
31051 5' -68.2 NC_006560.1 + 47840 0.66 0.400839
Target:  5'- uGGggGCGgGgaggucaCGgGGuCCGGCGGCGGg -3'
miRNA:   3'- -CCgaCGCgCg------GCgCC-GGCCGCCGCCg -5'
31051 5' -68.2 NC_006560.1 + 70454 0.66 0.400839
Target:  5'- gGGcCUGCGgGCCGCGaucGCCGa-GGCcauGGCc -3'
miRNA:   3'- -CC-GACGCgCGGCGC---CGGCcgCCG---CCG- -5'
31051 5' -68.2 NC_006560.1 + 83465 0.66 0.400839
Target:  5'- aGCUGC-UGCaCGCGcGCC-GUGGCGcGCa -3'
miRNA:   3'- cCGACGcGCG-GCGC-CGGcCGCCGC-CG- -5'
31051 5' -68.2 NC_006560.1 + 83341 0.66 0.400839
Target:  5'- cGGggGCGaggagGgCGCGGgCGGCGGCccggGGCc -3'
miRNA:   3'- -CCgaCGCg----CgGCGCCgGCCGCCG----CCG- -5'
31051 5' -68.2 NC_006560.1 + 150062 0.66 0.400839
Target:  5'- cGGCcGCGCcCCGCGcCCGGCcGCGcccGCc -3'
miRNA:   3'- -CCGaCGCGcGGCGCcGGCCGcCGC---CG- -5'
31051 5' -68.2 NC_006560.1 + 36101 0.66 0.400839
Target:  5'- cGGCg--GgGCCGCGGCgGGCaccGgGGCc -3'
miRNA:   3'- -CCGacgCgCGGCGCCGgCCGc--CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.