miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31055 5' -56.5 NC_006560.1 + 144361 0.66 0.903679
Target:  5'- gGCCGCGGGGCcGCgGCGGcagGGgcGGcGUc -3'
miRNA:   3'- -CGGCGCCCUGuCG-UGCU---UCuaCCuCA- -5'
31055 5' -56.5 NC_006560.1 + 11925 0.66 0.903679
Target:  5'- aGCCGCGGGcCcGCAgGAGGGgccGGcGGg -3'
miRNA:   3'- -CGGCGCCCuGuCGUgCUUCUa--CC-UCa -5'
31055 5' -56.5 NC_006560.1 + 27752 0.66 0.903679
Target:  5'- cGCgCGCGcGGGCAGC-CG-GGAUcGAGUg -3'
miRNA:   3'- -CG-GCGC-CCUGUCGuGCuUCUAcCUCA- -5'
31055 5' -56.5 NC_006560.1 + 40914 0.66 0.903679
Target:  5'- cGUCGCGcGGcACAGCGCGGc---GGGGUc -3'
miRNA:   3'- -CGGCGC-CC-UGUCGUGCUucuaCCUCA- -5'
31055 5' -56.5 NC_006560.1 + 124347 0.66 0.903679
Target:  5'- uGCUGCGGGGCguccGGCGaccccUGGAcGUGGAGc -3'
miRNA:   3'- -CGGCGCCCUG----UCGU-----GCUUcUACCUCa -5'
31055 5' -56.5 NC_006560.1 + 19334 0.66 0.903679
Target:  5'- gGCCGCacGGGuACGGaCACGu-GGUGGAa- -3'
miRNA:   3'- -CGGCG--CCC-UGUC-GUGCuuCUACCUca -5'
31055 5' -56.5 NC_006560.1 + 67691 0.66 0.903679
Target:  5'- cGCCGCGccgccccccgaGGAgAGC-CGGAGccGGAGc -3'
miRNA:   3'- -CGGCGC-----------CCUgUCGuGCUUCuaCCUCa -5'
31055 5' -56.5 NC_006560.1 + 119630 0.66 0.897319
Target:  5'- gGCgGCGGGGCcGCGCGcaucgcGGAGg -3'
miRNA:   3'- -CGgCGCCCUGuCGUGCuucua-CCUCa -5'
31055 5' -56.5 NC_006560.1 + 67143 0.66 0.897319
Target:  5'- uUCGgGGGGgGGCGgGGugGGGUGGGGa -3'
miRNA:   3'- cGGCgCCCUgUCGUgCU--UCUACCUCa -5'
31055 5' -56.5 NC_006560.1 + 15813 0.66 0.897319
Target:  5'- aCCGCGGccGACAGCcgccCGAc-GUGGAGUc -3'
miRNA:   3'- cGGCGCC--CUGUCGu---GCUucUACCUCA- -5'
31055 5' -56.5 NC_006560.1 + 108069 0.66 0.897319
Target:  5'- cCCGaCGGG-CAGUuccCGggGcgGGAGg -3'
miRNA:   3'- cGGC-GCCCuGUCGu--GCuuCuaCCUCa -5'
31055 5' -56.5 NC_006560.1 + 133149 0.66 0.897319
Target:  5'- gGCCGCGGcaGC-GCGCGAAGuaguccucGGAGg -3'
miRNA:   3'- -CGGCGCCc-UGuCGUGCUUCua------CCUCa -5'
31055 5' -56.5 NC_006560.1 + 96239 0.66 0.897319
Target:  5'- gGCCGCGcGACGcuGCGgGAAGAccugcgGGAGa -3'
miRNA:   3'- -CGGCGCcCUGU--CGUgCUUCUa-----CCUCa -5'
31055 5' -56.5 NC_006560.1 + 97639 0.66 0.89471
Target:  5'- gGCCGcCGGGugAGCGCGcgcaugcucGGGGa -3'
miRNA:   3'- -CGGC-GCCCugUCGUGCuucua----CCUCa -5'
31055 5' -56.5 NC_006560.1 + 13279 0.66 0.890729
Target:  5'- gGCCGgucguaCGGGcacuCGGCguacuccaucACGAGGAUGGGGa -3'
miRNA:   3'- -CGGC------GCCCu---GUCG----------UGCUUCUACCUCa -5'
31055 5' -56.5 NC_006560.1 + 32657 0.66 0.890729
Target:  5'- gGCCGCccGGcGGCGGCACGggGucggcccaGAGg -3'
miRNA:   3'- -CGGCG--CC-CUGUCGUGCuuCuac-----CUCa -5'
31055 5' -56.5 NC_006560.1 + 72233 0.66 0.890729
Target:  5'- cGCCGCcGGuCGGCGagGggGgcGGAGg -3'
miRNA:   3'- -CGGCGcCCuGUCGUg-CuuCuaCCUCa -5'
31055 5' -56.5 NC_006560.1 + 114340 0.66 0.890729
Target:  5'- cCCGCGGG--GGCGCGcGGccGGGGg -3'
miRNA:   3'- cGGCGCCCugUCGUGCuUCuaCCUCa -5'
31055 5' -56.5 NC_006560.1 + 131872 0.66 0.890729
Target:  5'- cGCUGCGGGGCgcGGuCGCGgcGuacgcGGAGg -3'
miRNA:   3'- -CGGCGCCCUG--UC-GUGCuuCua---CCUCa -5'
31055 5' -56.5 NC_006560.1 + 141712 0.66 0.890729
Target:  5'- uCCG-GGGGgGGgGCGAAGGUGGcGGg -3'
miRNA:   3'- cGGCgCCCUgUCgUGCUUCUACC-UCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.