miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31056 5' -60.6 NC_006560.1 + 131410 0.66 0.726669
Target:  5'- gCGGaCGCGcGCCCCUgggCCcGGGCCgucGCg -3'
miRNA:   3'- gGUC-GUGU-CGGGGGa--GGuCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 66691 0.66 0.723794
Target:  5'- cCCAGCcacucgacccgGCGGCCCgggggggcgugcugCCgggCCAGGGCCg-- -3'
miRNA:   3'- -GGUCG-----------UGUCGGG--------------GGa--GGUCCUGGacg -5'
31056 5' -60.6 NC_006560.1 + 29756 0.66 0.71706
Target:  5'- gCgAGCccgGGCCCgCCUCCcgGGGGCCgcggGCc -3'
miRNA:   3'- -GgUCGug-UCGGG-GGAGG--UCCUGGa---CG- -5'
31056 5' -60.6 NC_006560.1 + 7503 0.66 0.71706
Target:  5'- -gAGgACGGCCCCCUcCCGGGGgUUc- -3'
miRNA:   3'- ggUCgUGUCGGGGGA-GGUCCUgGAcg -5'
31056 5' -60.6 NC_006560.1 + 49516 0.66 0.71706
Target:  5'- gCCAGCcucacacCAGCCCCCcucauccucUCCGGccccgucgcGGCCUcGCg -3'
miRNA:   3'- -GGUCGu------GUCGGGGG---------AGGUC---------CUGGA-CG- -5'
31056 5' -60.6 NC_006560.1 + 148869 0.66 0.71706
Target:  5'- aUCAGCauaggGCGGCCCCCggggaucuUCCGGGcucucCCcGCu -3'
miRNA:   3'- -GGUCG-----UGUCGGGGG--------AGGUCCu----GGaCG- -5'
31056 5' -60.6 NC_006560.1 + 23828 0.66 0.71706
Target:  5'- gUCGGCGCcGCCgCCgCC--GACCUGCu -3'
miRNA:   3'- -GGUCGUGuCGGgGGaGGucCUGGACG- -5'
31056 5' -60.6 NC_006560.1 + 24481 0.66 0.71706
Target:  5'- gCCGcGCGCGGCggCCUCUCCuu--CCUGCu -3'
miRNA:   3'- -GGU-CGUGUCG--GGGGAGGuccuGGACG- -5'
31056 5' -60.6 NC_006560.1 + 112164 0.66 0.71706
Target:  5'- gCCGGUggacGCGGCgaaCCCCUaCGGGGCCUa- -3'
miRNA:   3'- -GGUCG----UGUCG---GGGGAgGUCCUGGAcg -5'
31056 5' -60.6 NC_006560.1 + 134234 0.66 0.71706
Target:  5'- cCCGccGCGCGGCCCgCCcCCGcGGCCcGCc -3'
miRNA:   3'- -GGU--CGUGUCGGG-GGaGGUcCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 145633 0.66 0.71706
Target:  5'- gCCcGCccuGCGGCCCCUgcccCCAGaGACCacGCg -3'
miRNA:   3'- -GGuCG---UGUCGGGGGa---GGUC-CUGGa-CG- -5'
31056 5' -60.6 NC_006560.1 + 1580 0.66 0.71706
Target:  5'- cCCucGCGC-GCCCCCUCCuccGAUCgacGCg -3'
miRNA:   3'- -GGu-CGUGuCGGGGGAGGuc-CUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 144109 0.66 0.716095
Target:  5'- uCC-GC-CGGCCCCugccuggCUCCGGcGGCCgcgGCg -3'
miRNA:   3'- -GGuCGuGUCGGGG-------GAGGUC-CUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 51770 0.66 0.715129
Target:  5'- gCCGGUggccucGC-GCCCCCcggcggcgggcgCCGGGACCgugGCc -3'
miRNA:   3'- -GGUCG------UGuCGGGGGa-----------GGUCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 23333 0.66 0.707382
Target:  5'- gCCGGCGCcgcGCCgCCgccCCGGGACgCcGCc -3'
miRNA:   3'- -GGUCGUGu--CGGgGGa--GGUCCUG-GaCG- -5'
31056 5' -60.6 NC_006560.1 + 67860 0.66 0.707382
Target:  5'- gCCGcGCGCcGCCCCCagaggacgUCCGGGuggcGCC-GCg -3'
miRNA:   3'- -GGU-CGUGuCGGGGG--------AGGUCC----UGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 71741 0.66 0.707382
Target:  5'- -gGGCGCGGCCUgcgcugcguguUCUCCAGGGUCUacgGCg -3'
miRNA:   3'- ggUCGUGUCGGG-----------GGAGGUCCUGGA---CG- -5'
31056 5' -60.6 NC_006560.1 + 149866 0.66 0.707382
Target:  5'- cCCGGCACccccGGCaCCCCcggCCgcggaAGGGCCccGCg -3'
miRNA:   3'- -GGUCGUG----UCG-GGGGa--GG-----UCCUGGa-CG- -5'
31056 5' -60.6 NC_006560.1 + 150425 0.66 0.707382
Target:  5'- cCCcGCGCcccGCCCCCgcggCCGcGGCCgGCg -3'
miRNA:   3'- -GGuCGUGu--CGGGGGa---GGUcCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 1243 0.66 0.707382
Target:  5'- cCCA-CGCAGCCCCgg-CGGGGCCcccGCg -3'
miRNA:   3'- -GGUcGUGUCGGGGgagGUCCUGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.