miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 3' -64 NC_006560.1 + 134288 0.66 0.569474
Target:  5'- aCCgucGCCgaGUccaUCaGGUGCCCCCCCg -3'
miRNA:   3'- -GGaccCGGgaCA---AGcCCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 99462 0.66 0.569474
Target:  5'- cCCcGGGCgCCggcgccGgaCGGGCGCgCCgCCCg -3'
miRNA:   3'- -GGaCCCG-GGa-----CaaGCCCGUGgGG-GGG- -5'
31057 3' -64 NC_006560.1 + 149763 0.66 0.569474
Target:  5'- cCCgGGGCgCgggGgcgUCGaGGCGCCacgccuaaCCCCCg -3'
miRNA:   3'- -GGaCCCGgGa--Ca--AGC-CCGUGG--------GGGGG- -5'
31057 3' -64 NC_006560.1 + 40935 0.66 0.568525
Target:  5'- --gGGGuCCCgcggGUcuUCGGGgggcgccCGCUCCCCCg -3'
miRNA:   3'- ggaCCC-GGGa---CA--AGCCC-------GUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 145101 0.66 0.567577
Target:  5'- cCCUGGGgcagcccccgcccCCCgUGUcccugCGGGgggcucuggccccCGCCCCCCUg -3'
miRNA:   3'- -GGACCC-------------GGG-ACAa----GCCC-------------GUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 145182 0.66 0.560005
Target:  5'- cCCUGGGgggcgcccuaCCUGcUCuaccccuGGgGCCCCCCCu -3'
miRNA:   3'- -GGACCCg---------GGACaAGc------CCgUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 86793 0.66 0.560005
Target:  5'- cCUUGGcGCCCUGguaccccaCGuGCcgGCCCCCCUc -3'
miRNA:   3'- -GGACC-CGGGACaa------GCcCG--UGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 26836 0.66 0.560005
Target:  5'- gCCgGGGaCCCgGggCGcGGCcggccgccGCCCCCCg -3'
miRNA:   3'- -GGaCCC-GGGaCaaGC-CCG--------UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 123364 0.66 0.550579
Target:  5'- -gUGGGCCa----CGGGUACaaccagCCCCCCg -3'
miRNA:   3'- ggACCCGGgacaaGCCCGUG------GGGGGG- -5'
31057 3' -64 NC_006560.1 + 20001 0.66 0.550579
Target:  5'- uCC-GGGCUCcacucGUcCGGGUgguGCCCCUCCg -3'
miRNA:   3'- -GGaCCCGGGa----CAaGCCCG---UGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 32169 0.66 0.550579
Target:  5'- cCCcGGcGCCgaGggCGGGUcgagGCCCgCCCg -3'
miRNA:   3'- -GGaCC-CGGgaCaaGCCCG----UGGGgGGG- -5'
31057 3' -64 NC_006560.1 + 131316 0.66 0.550579
Target:  5'- gCUGgccgcGGCCCUGUgcggccUCGGccucgagccccGCGCCgaCCCCCg -3'
miRNA:   3'- gGAC-----CCGGGACA------AGCC-----------CGUGG--GGGGG- -5'
31057 3' -64 NC_006560.1 + 78639 0.67 0.541203
Target:  5'- gCUGGucgccgcgcGCCCgcucgCGGGgAgCCCCCCg -3'
miRNA:   3'- gGACC---------CGGGacaa-GCCCgUgGGGGGG- -5'
31057 3' -64 NC_006560.1 + 69821 0.67 0.541203
Target:  5'- cCCU-GGCCCUcGUggUCGGGgACgCCCUg -3'
miRNA:   3'- -GGAcCCGGGA-CA--AGCCCgUGgGGGGg -5'
31057 3' -64 NC_006560.1 + 80661 0.67 0.541203
Target:  5'- uCCUGGGCUagacgcaucgGaUCGcGGCAUCUCCCg -3'
miRNA:   3'- -GGACCCGGga--------CaAGC-CCGUGGGGGGg -5'
31057 3' -64 NC_006560.1 + 88361 0.67 0.541203
Target:  5'- gCCgUGGGCgCgc--CaGGCACCCCCgCCg -3'
miRNA:   3'- -GG-ACCCGgGacaaGcCCGUGGGGG-GG- -5'
31057 3' -64 NC_006560.1 + 115346 0.67 0.541203
Target:  5'- gCCUGGugccGCCCgUGUUCGaGgGCCCgUCCa -3'
miRNA:   3'- -GGACC----CGGG-ACAAGCcCgUGGGgGGG- -5'
31057 3' -64 NC_006560.1 + 30590 0.67 0.541203
Target:  5'- gCC-GcGGCCCgcgUCGcGCGCCCgCCCCc -3'
miRNA:   3'- -GGaC-CCGGGacaAGCcCGUGGG-GGGG- -5'
31057 3' -64 NC_006560.1 + 68804 0.67 0.531881
Target:  5'- aCCaGGGaCCgcggGaUCGuGGCGCCCCCgCg -3'
miRNA:   3'- -GGaCCCgGGa---CaAGC-CCGUGGGGGgG- -5'
31057 3' -64 NC_006560.1 + 67213 0.67 0.531881
Target:  5'- aCCgGGGCCCccUUCGcGCgagcucguGCCCCCCa -3'
miRNA:   3'- -GGaCCCGGGacAAGCcCG--------UGGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.