miRNA display CGI


Results 21 - 40 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31058 3' -66.3 NC_006560.1 + 21623 0.66 0.452841
Target:  5'- -cGCCGcCGGCCGCAugcUaaugcgauccucgacGGGCGGCGc-- -3'
miRNA:   3'- guCGGC-GCCGGCGU---G---------------CCCGCCGCuca -5'
31058 3' -66.3 NC_006560.1 + 87153 0.66 0.449405
Target:  5'- --cCCGC-GCUGCGCGGGCccGGCGGcGUa -3'
miRNA:   3'- gucGGCGcCGGCGUGCCCG--CCGCU-CA- -5'
31058 3' -66.3 NC_006560.1 + 68668 0.66 0.449405
Target:  5'- gGGCCuGCGGUUccugGCGCGGGCcagcaacugGGCGAc- -3'
miRNA:   3'- gUCGG-CGCCGG----CGUGCCCG---------CCGCUca -5'
31058 3' -66.3 NC_006560.1 + 73802 0.66 0.449405
Target:  5'- gGGCCagaaGGCCGUcgaGgGGGCGGUGAa- -3'
miRNA:   3'- gUCGGcg--CCGGCG---UgCCCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 55012 0.66 0.449405
Target:  5'- gGGgCGgGG-CGCGCGGaaaggcgcGCGGCGAGa -3'
miRNA:   3'- gUCgGCgCCgGCGUGCC--------CGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 52616 0.66 0.449405
Target:  5'- gGGCUGCGGauccccgagagcCCGC-CGGGCgagGGCGAc- -3'
miRNA:   3'- gUCGGCGCC------------GGCGuGCCCG---CCGCUca -5'
31058 3' -66.3 NC_006560.1 + 11307 0.66 0.449405
Target:  5'- gGGCCGCcucguucacGGCCGagaugcuCGGGgcgacCGGCGAGg -3'
miRNA:   3'- gUCGGCG---------CCGGCgu-----GCCC-----GCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 92951 0.66 0.448549
Target:  5'- aGGCCGaGGCCcucGUcacccagACGGGCGGCGcGGa -3'
miRNA:   3'- gUCGGCgCCGG---CG-------UGCCCGCCGC-UCa -5'
31058 3' -66.3 NC_006560.1 + 139958 0.66 0.446838
Target:  5'- gCGGaCCGCGGUCaggauguugcgcagGCugGGGgGaGCGGGg -3'
miRNA:   3'- -GUC-GGCGCCGG--------------CGugCCCgC-CGCUCa -5'
31058 3' -66.3 NC_006560.1 + 18794 0.66 0.444279
Target:  5'- gCGGCCGCGGgacgccgucgcgUCGCGCccacgcgggugcgucGGGCGGCuccgcGAGg -3'
miRNA:   3'- -GUCGGCGCC------------GGCGUG---------------CCCGCCG-----CUCa -5'
31058 3' -66.3 NC_006560.1 + 3099 0.66 0.44088
Target:  5'- gCAGCgCGCGGCCaGCGaGGccagcGCGcGCGGGUc -3'
miRNA:   3'- -GUCG-GCGCCGG-CGUgCC-----CGC-CGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 51730 0.66 0.44088
Target:  5'- gGGCCGa---CGCGCGGGCGGCc--- -3'
miRNA:   3'- gUCGGCgccgGCGUGCCCGCCGcuca -5'
31058 3' -66.3 NC_006560.1 + 5301 0.66 0.44088
Target:  5'- -cGUCGuCGGCCGcCGCGugcgacGGCGGCGGc- -3'
miRNA:   3'- guCGGC-GCCGGC-GUGC------CCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 23640 0.66 0.44088
Target:  5'- -cGCCGCGcCCGCGCGccuGGCuGcGCGAGc -3'
miRNA:   3'- guCGGCGCcGGCGUGC---CCG-C-CGCUCa -5'
31058 3' -66.3 NC_006560.1 + 33192 0.66 0.44088
Target:  5'- gGGCCcgcggggaagGCGGCCGCG-GGGCaGaCGGGg -3'
miRNA:   3'- gUCGG----------CGCCGGCGUgCCCGcC-GCUCa -5'
31058 3' -66.3 NC_006560.1 + 37821 0.66 0.44088
Target:  5'- cCGGCagCGaCGGCCGCACGcuGCGcuGCGGGUc -3'
miRNA:   3'- -GUCG--GC-GCCGGCGUGCc-CGC--CGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 84679 0.66 0.44088
Target:  5'- gGGCUGCuGCCccgccugcgGCGCGGGCGaCGGGc -3'
miRNA:   3'- gUCGGCGcCGG---------CGUGCCCGCcGCUCa -5'
31058 3' -66.3 NC_006560.1 + 108052 0.66 0.44088
Target:  5'- uCGGCgCGCGcGUCGCucccgACGGGCaguucccggGGCGGGa -3'
miRNA:   3'- -GUCG-GCGC-CGGCG-----UGCCCG---------CCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 54747 0.66 0.44088
Target:  5'- cCAGCCaccCGGCCcCGCaGGGC-GCGAGg -3'
miRNA:   3'- -GUCGGc--GCCGGcGUG-CCCGcCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 118234 0.66 0.44088
Target:  5'- -cGCCGgcaccCGGuCCGCGCGGGC-GCGGa- -3'
miRNA:   3'- guCGGC-----GCC-GGCGUGCCCGcCGCUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.