miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31059 3' -55.6 NC_006560.1 + 10302 0.66 0.930425
Target:  5'- cGGGccgccGGGGACCGCCgCCgcgacccgcGGCcCGACGg -3'
miRNA:   3'- aCCC-----UUUCUGGUGGaGG---------UCGaGCUGC- -5'
31059 3' -55.6 NC_006560.1 + 125500 0.66 0.930425
Target:  5'- cUGGGGGAcgcccCCGCCUCCGcGC-CGGCc -3'
miRNA:   3'- -ACCCUUUcu---GGUGGAGGU-CGaGCUGc -5'
31059 3' -55.6 NC_006560.1 + 131186 0.66 0.927281
Target:  5'- cGGGGGcgcccGGCCGCCUguccccggcgcugcgCCGGCccgCGACGc -3'
miRNA:   3'- aCCCUUu----CUGGUGGA---------------GGUCGa--GCUGC- -5'
31059 3' -55.6 NC_006560.1 + 15080 0.66 0.925138
Target:  5'- cGGGGGcucuGGCC-CCUCCGcCUCGGgGg -3'
miRNA:   3'- aCCCUUu---CUGGuGGAGGUcGAGCUgC- -5'
31059 3' -55.6 NC_006560.1 + 97405 0.66 0.925138
Target:  5'- gGGGAGGcGGCCACC-CCGGgcccCUcCGugGa -3'
miRNA:   3'- aCCCUUU-CUGGUGGaGGUC----GA-GCugC- -5'
31059 3' -55.6 NC_006560.1 + 116888 0.66 0.925138
Target:  5'- cGGGccggucGucGGCCGCCUCgCGGCUCuGCc -3'
miRNA:   3'- aCCC------UuuCUGGUGGAG-GUCGAGcUGc -5'
31059 3' -55.6 NC_006560.1 + 135959 0.66 0.925138
Target:  5'- cUGGGAGGuGAUCGCCgacaucacCCGGCgcgcggUGGCGg -3'
miRNA:   3'- -ACCCUUU-CUGGUGGa-------GGUCGa-----GCUGC- -5'
31059 3' -55.6 NC_006560.1 + 60060 0.66 0.919611
Target:  5'- cGGGGuggacugcaccGAGGCCGCCgu--GUUCGGCGc -3'
miRNA:   3'- aCCCU-----------UUCUGGUGGagguCGAGCUGC- -5'
31059 3' -55.6 NC_006560.1 + 15465 0.66 0.919611
Target:  5'- cGGGccAGGGGCUcguCCUCCuGGgUCGGCGa -3'
miRNA:   3'- aCCC--UUUCUGGu--GGAGG-UCgAGCUGC- -5'
31059 3' -55.6 NC_006560.1 + 148487 0.66 0.919611
Target:  5'- aGGGAGAGcGCggagGCCUCCcGGCggGACGg -3'
miRNA:   3'- aCCCUUUC-UGg---UGGAGG-UCGagCUGC- -5'
31059 3' -55.6 NC_006560.1 + 147948 0.66 0.913845
Target:  5'- cGGGAGgcGGGCCcgGgCUCgCagAGCUCGGCGu -3'
miRNA:   3'- aCCCUU--UCUGG--UgGAG-G--UCGAGCUGC- -5'
31059 3' -55.6 NC_006560.1 + 118253 0.66 0.913845
Target:  5'- cGGGcgcGGACCGCCgcgccgccCCGGC-CGugGc -3'
miRNA:   3'- aCCCuu-UCUGGUGGa-------GGUCGaGCugC- -5'
31059 3' -55.6 NC_006560.1 + 107286 0.66 0.913845
Target:  5'- -cGGcGAGAUCACCUCCGcGCuggucgUCGACu -3'
miRNA:   3'- acCCuUUCUGGUGGAGGU-CG------AGCUGc -5'
31059 3' -55.6 NC_006560.1 + 115548 0.66 0.907841
Target:  5'- cGGG----GCgCGCCUCCcGCUCGugGc -3'
miRNA:   3'- aCCCuuucUG-GUGGAGGuCGAGCugC- -5'
31059 3' -55.6 NC_006560.1 + 31514 0.66 0.907841
Target:  5'- cGGGc--GACUGCCUgCCGGUccUCGACa -3'
miRNA:   3'- aCCCuuuCUGGUGGA-GGUCG--AGCUGc -5'
31059 3' -55.6 NC_006560.1 + 27878 0.66 0.907841
Target:  5'- gGGGGccgcGAGGCCGCCUCCGcccccccuuGCgcaCGuCGg -3'
miRNA:   3'- aCCCU----UUCUGGUGGAGGU---------CGa--GCuGC- -5'
31059 3' -55.6 NC_006560.1 + 3161 0.66 0.907841
Target:  5'- cGGGGAAGAgCGgguggUCCgagAGCUCGGCGa -3'
miRNA:   3'- aCCCUUUCUgGUgg---AGG---UCGAGCUGC- -5'
31059 3' -55.6 NC_006560.1 + 221 0.66 0.907841
Target:  5'- cGGGAGGGcCCgGCC-CgCGGCUCGguGCGg -3'
miRNA:   3'- aCCCUUUCuGG-UGGaG-GUCGAGC--UGC- -5'
31059 3' -55.6 NC_006560.1 + 135322 0.66 0.9016
Target:  5'- gUGGGguGGGCCugCacCCAGCcgUCGuCGg -3'
miRNA:   3'- -ACCCuuUCUGGugGa-GGUCG--AGCuGC- -5'
31059 3' -55.6 NC_006560.1 + 27377 0.66 0.9016
Target:  5'- cGGGAAacgcggcgcgggGGGCCGggcCCUCCcGCggCGGCGc -3'
miRNA:   3'- aCCCUU------------UCUGGU---GGAGGuCGa-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.