miRNA display CGI


Results 1 - 20 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31059 5' -58.7 NC_006560.1 + 142948 0.66 0.839646
Target:  5'- -cCCUCGAGCUcgcgaggcgacGCGCGggccGCCGCGgcgagcgacccccggCCCg -3'
miRNA:   3'- caGGAGCUUGG-----------UGUGC----CGGCGCa--------------GGG- -5'
31059 5' -58.7 NC_006560.1 + 73 0.66 0.838851
Target:  5'- gGUCCgggCGGGCCcucccCGCGccCCGCGcCCCg -3'
miRNA:   3'- -CAGGa--GCUUGGu----GUGCc-GGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 41713 0.66 0.838851
Target:  5'- gGUCCgcgUGGgcgGCCACGaacGCCGCcacGUCCCg -3'
miRNA:   3'- -CAGGa--GCU---UGGUGUgc-CGGCG---CAGGG- -5'
31059 5' -58.7 NC_006560.1 + 119067 0.66 0.838851
Target:  5'- uUCUUcCGGACggcgUACGCGGCgGCcGUCCUg -3'
miRNA:   3'- cAGGA-GCUUG----GUGUGCCGgCG-CAGGG- -5'
31059 5' -58.7 NC_006560.1 + 127163 0.66 0.838851
Target:  5'- -gCgUCGAGCU---CGGCgGCGUCCUg -3'
miRNA:   3'- caGgAGCUUGGuguGCCGgCGCAGGG- -5'
31059 5' -58.7 NC_006560.1 + 150402 0.66 0.838851
Target:  5'- gGUCCgggCGGGCCcucccCGCGccCCGCGcCCCg -3'
miRNA:   3'- -CAGGa--GCUUGGu----GUGCc-GGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 10604 0.66 0.838851
Target:  5'- -cCCaCGAcgGCCGCAgCGGcCCGCaGUUCCg -3'
miRNA:   3'- caGGaGCU--UGGUGU-GCC-GGCG-CAGGG- -5'
31059 5' -58.7 NC_006560.1 + 27782 0.66 0.838851
Target:  5'- -gCCacCGAcGCCGCGCccGGCCGCcGUUCCu -3'
miRNA:   3'- caGGa-GCU-UGGUGUG--CCGGCG-CAGGG- -5'
31059 5' -58.7 NC_006560.1 + 144333 0.66 0.838851
Target:  5'- cUCCgCGGccccGCCGCgggcgcgagACGGCCGCGgggCCg -3'
miRNA:   3'- cAGGaGCU----UGGUG---------UGCCGGCGCa--GGg -5'
31059 5' -58.7 NC_006560.1 + 129303 0.66 0.838851
Target:  5'- cGUCUguaCGAccACUACGCcGCCGgcguCGUCCCg -3'
miRNA:   3'- -CAGGa--GCU--UGGUGUGcCGGC----GCAGGG- -5'
31059 5' -58.7 NC_006560.1 + 94439 0.66 0.838851
Target:  5'- gGUUCUCGGagGCgGCGCGGgCGCG-CgCg -3'
miRNA:   3'- -CAGGAGCU--UGgUGUGCCgGCGCaGgG- -5'
31059 5' -58.7 NC_006560.1 + 103605 0.66 0.838851
Target:  5'- cGUCagcagCGAACCGCACacCCGCGuggcgguaaacUCCCg -3'
miRNA:   3'- -CAGga---GCUUGGUGUGccGGCGC-----------AGGG- -5'
31059 5' -58.7 NC_006560.1 + 78057 0.66 0.838851
Target:  5'- -cCCggagcuggCGGccgGCgGCGCGGCCGCGgcgCUCg -3'
miRNA:   3'- caGGa-------GCU---UGgUGUGCCGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 7590 0.66 0.838055
Target:  5'- --gCUCGAGCCGCuccguacGCGGCagaaccgGCG-CCCg -3'
miRNA:   3'- cagGAGCUUGGUG-------UGCCGg------CGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 149834 0.66 0.83081
Target:  5'- -gCCUCGcGGCCcC-CGGCCGCGggcgggagaccCCCg -3'
miRNA:   3'- caGGAGC-UUGGuGuGCCGGCGCa----------GGG- -5'
31059 5' -58.7 NC_006560.1 + 18329 0.66 0.83081
Target:  5'- cGUCgUCGugcgcgcggccGACCugcgGCGCguGGCCGCGcCCCu -3'
miRNA:   3'- -CAGgAGC-----------UUGG----UGUG--CCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 29051 0.66 0.83081
Target:  5'- --aUUUGGGCCGCGucucCGGCCGgCGgggCCCg -3'
miRNA:   3'- cagGAGCUUGGUGU----GCCGGC-GCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 74970 0.66 0.83081
Target:  5'- cGUUCUCGc----CGCGGCCGUGgccgCCCu -3'
miRNA:   3'- -CAGGAGCuugguGUGCCGGCGCa---GGG- -5'
31059 5' -58.7 NC_006560.1 + 94166 0.66 0.83081
Target:  5'- -aCCUCGucacgcccCCGCGCGGCgC-CGUCgCCg -3'
miRNA:   3'- caGGAGCuu------GGUGUGCCG-GcGCAG-GG- -5'
31059 5' -58.7 NC_006560.1 + 87218 0.66 0.83081
Target:  5'- uGUCCUUGAgaACCGCcuCGGCgacgGCGUUCa -3'
miRNA:   3'- -CAGGAGCU--UGGUGu-GCCGg---CGCAGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.