miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31059 5' -58.7 NC_006560.1 + 82405 1.1 0.001614
Target:  5'- gGUCCUCGAACCACACGGCCGCGUCCCc -3'
miRNA:   3'- -CAGGAGCUUGGUGUGCCGGCGCAGGG- -5'
31059 5' -58.7 NC_006560.1 + 102438 0.79 0.19871
Target:  5'- cUCCUCG-GCCGcCGCGGCCGcCGUCuCCa -3'
miRNA:   3'- cAGGAGCuUGGU-GUGCCGGC-GCAG-GG- -5'
31059 5' -58.7 NC_006560.1 + 2186 0.79 0.20356
Target:  5'- -gCCUCGGGCCcggcgcGCGCGGCCGCGcggUCCa -3'
miRNA:   3'- caGGAGCUUGG------UGUGCCGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 94034 0.79 0.208513
Target:  5'- aGUCCaUGGGCCucGCGCGGCCGUG-CCCg -3'
miRNA:   3'- -CAGGaGCUUGG--UGUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 105486 0.78 0.218731
Target:  5'- uUCCUCGGcaACCcgucCGCGGCCGCGcUCCUg -3'
miRNA:   3'- cAGGAGCU--UGGu---GUGCCGGCGC-AGGG- -5'
31059 5' -58.7 NC_006560.1 + 133170 0.78 0.222407
Target:  5'- aGUCCUCGGAggcggugagggcguCCGCGgGGCCGCcGUCCa -3'
miRNA:   3'- -CAGGAGCUU--------------GGUGUgCCGGCG-CAGGg -5'
31059 5' -58.7 NC_006560.1 + 22723 0.78 0.229373
Target:  5'- -gCUUCacGGCCGCGCGGCCGCGgCCCg -3'
miRNA:   3'- caGGAGc-UUGGUGUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 63294 0.78 0.24045
Target:  5'- -cCCaUCGAGCgCAgGCGGUCGUGUCCCc -3'
miRNA:   3'- caGG-AGCUUG-GUgUGCCGGCGCAGGG- -5'
31059 5' -58.7 NC_006560.1 + 1915 0.77 0.251382
Target:  5'- aGUCCUCGGcgGCCGC-CGGCuCGCcguccggGUCCCa -3'
miRNA:   3'- -CAGGAGCU--UGGUGuGCCG-GCG-------CAGGG- -5'
31059 5' -58.7 NC_006560.1 + 88847 0.77 0.251969
Target:  5'- uGUCCcacCGAGCCcaugauggACGCGGCCGUGcCCCg -3'
miRNA:   3'- -CAGGa--GCUUGG--------UGUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 110692 0.77 0.251969
Target:  5'- cUCCgcCGAGCCGC-CGGCCGUcUCCCg -3'
miRNA:   3'- cAGGa-GCUUGGUGuGCCGGCGcAGGG- -5'
31059 5' -58.7 NC_006560.1 + 129066 0.77 0.251969
Target:  5'- cUCCgCGAGCUGCGCGGCgGCGaCCCc -3'
miRNA:   3'- cAGGaGCUUGGUGUGCCGgCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 25168 0.77 0.251969
Target:  5'- -aCCUggcgcUGGACCGCGCGGCCGCGcgcgccgggCCCg -3'
miRNA:   3'- caGGA-----GCUUGGUGUGCCGGCGCa--------GGG- -5'
31059 5' -58.7 NC_006560.1 + 102403 0.77 0.276366
Target:  5'- -cCCUCGGcgGCCucggGCGCGGCCGCGgcgUCCg -3'
miRNA:   3'- caGGAGCU--UGG----UGUGCCGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 39661 0.77 0.276366
Target:  5'- --gCUCGGGCC--GCGGCCGCGcCCCg -3'
miRNA:   3'- cagGAGCUUGGugUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 133456 0.76 0.282753
Target:  5'- cGUCCUCGGGCC-CGCgGGCUccgggGCGUCCg -3'
miRNA:   3'- -CAGGAGCUUGGuGUG-CCGG-----CGCAGGg -5'
31059 5' -58.7 NC_006560.1 + 58078 0.76 0.302614
Target:  5'- -gCC-CGAACCccagguccgcguACGCGGCCGCG-CCCg -3'
miRNA:   3'- caGGaGCUUGG------------UGUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 89942 0.76 0.309469
Target:  5'- gGUUCUCGGcCCACGC-GCCGCGgCCCu -3'
miRNA:   3'- -CAGGAGCUuGGUGUGcCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 21686 0.75 0.316442
Target:  5'- aUCCUCGAcgggcggcGCCGC-CGGCCGCc-CCCg -3'
miRNA:   3'- cAGGAGCU--------UGGUGuGCCGGCGcaGGG- -5'
31059 5' -58.7 NC_006560.1 + 97727 0.75 0.316442
Target:  5'- --aCUCGAugCGCGUGGCCGCGcgCCCc -3'
miRNA:   3'- cagGAGCUugGUGUGCCGGCGCa-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.