miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31059 5' -58.7 NC_006560.1 + 81550 0.66 0.83081
Target:  5'- cGUgCUCG-GCCGCGCGacagaggaugcGCCGCGUgCg -3'
miRNA:   3'- -CAgGAGCuUGGUGUGC-----------CGGCGCAgGg -5'
31059 5' -58.7 NC_006560.1 + 86265 0.66 0.83081
Target:  5'- -gCCcCGGcGCgCGCAUGGCCGCGgCCUc -3'
miRNA:   3'- caGGaGCU-UG-GUGUGCCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 87218 0.66 0.83081
Target:  5'- uGUCCUUGAgaACCGCcuCGGCgacgGCGUUCa -3'
miRNA:   3'- -CAGGAGCU--UGGUGu-GCCGg---CGCAGGg -5'
31059 5' -58.7 NC_006560.1 + 96515 0.66 0.83081
Target:  5'- aUCUUCGAggACCGCGCccCCGUG-CCCu -3'
miRNA:   3'- cAGGAGCU--UGGUGUGccGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 94166 0.66 0.83081
Target:  5'- -aCCUCGucacgcccCCGCGCGGCgC-CGUCgCCg -3'
miRNA:   3'- caGGAGCuu------GGUGUGCCG-GcGCAG-GG- -5'
31059 5' -58.7 NC_006560.1 + 74970 0.66 0.83081
Target:  5'- cGUUCUCGc----CGCGGCCGUGgccgCCCu -3'
miRNA:   3'- -CAGGAGCuugguGUGCCGGCGCa---GGG- -5'
31059 5' -58.7 NC_006560.1 + 29051 0.66 0.83081
Target:  5'- --aUUUGGGCCGCGucucCGGCCGgCGgggCCCg -3'
miRNA:   3'- cagGAGCUUGGUGU----GCCGGC-GCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 18329 0.66 0.83081
Target:  5'- cGUCgUCGugcgcgcggccGACCugcgGCGCguGGCCGCGcCCCu -3'
miRNA:   3'- -CAGgAGC-----------UUGG----UGUG--CCGGCGCaGGG- -5'
31059 5' -58.7 NC_006560.1 + 149834 0.66 0.83081
Target:  5'- -gCCUCGcGGCCcC-CGGCCGCGggcgggagaccCCCg -3'
miRNA:   3'- caGGAGC-UUGGuGuGCCGGCGCa----------GGG- -5'
31059 5' -58.7 NC_006560.1 + 7072 0.66 0.829996
Target:  5'- --aCUCGcACCuCGCGGcCCGCGagaccgcgccuccUCCCg -3'
miRNA:   3'- cagGAGCuUGGuGUGCC-GGCGC-------------AGGG- -5'
31059 5' -58.7 NC_006560.1 + 82058 0.66 0.828364
Target:  5'- -cCCUCGAAggaguCCGCGCGGCggucgGCGUaggacuuucggcgaCCCa -3'
miRNA:   3'- caGGAGCUU-----GGUGUGCCGg----CGCA--------------GGG- -5'
31059 5' -58.7 NC_006560.1 + 114103 0.66 0.822598
Target:  5'- -gCCgcaGAACUucuacCugGGCCGCGgggCCCc -3'
miRNA:   3'- caGGag-CUUGGu----GugCCGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 64952 0.66 0.822598
Target:  5'- --gCUC--GCCGCcgGCGGCCuCGUCCCc -3'
miRNA:   3'- cagGAGcuUGGUG--UGCCGGcGCAGGG- -5'
31059 5' -58.7 NC_006560.1 + 66910 0.66 0.822598
Target:  5'- cGUgCUCGGcGCCGC-CGuccGCCGCGgccCCCg -3'
miRNA:   3'- -CAgGAGCU-UGGUGuGC---CGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 85371 0.66 0.822598
Target:  5'- -gCCUUGAACguCACGcacGCCGCG-CCg -3'
miRNA:   3'- caGGAGCUUGguGUGC---CGGCGCaGGg -5'
31059 5' -58.7 NC_006560.1 + 95294 0.66 0.822598
Target:  5'- -cUUUCGcGACCugACGGCCGCGg--- -3'
miRNA:   3'- caGGAGC-UUGGugUGCCGGCGCaggg -5'
31059 5' -58.7 NC_006560.1 + 12825 0.66 0.822598
Target:  5'- cGUCCUCGucgucgggGACCAgCucgGGCCGgGUgCCg -3'
miRNA:   3'- -CAGGAGC--------UUGGU-Gug-CCGGCgCAgGG- -5'
31059 5' -58.7 NC_006560.1 + 133489 0.66 0.822598
Target:  5'- cGUCUacgggCGAGCgCGaGCGGCCGCG-CCg -3'
miRNA:   3'- -CAGGa----GCUUG-GUgUGCCGGCGCaGGg -5'
31059 5' -58.7 NC_006560.1 + 142424 0.66 0.822598
Target:  5'- -aCCcCGGGCCccgccgcccggcGCgGCGGCCGCGcggCCCc -3'
miRNA:   3'- caGGaGCUUGG------------UG-UGCCGGCGCa--GGG- -5'
31059 5' -58.7 NC_006560.1 + 147128 0.66 0.822598
Target:  5'- -gCCgcggcgCGAGgCGCGCGcGCCGCGgcgCCg -3'
miRNA:   3'- caGGa-----GCUUgGUGUGC-CGGCGCa--GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.