miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31060 5' -58 NC_006560.1 + 149964 0.66 0.861552
Target:  5'- cGCGCGCGCGuGUcggauCGGGUccGCGcuaccGGGGc -3'
miRNA:   3'- -CGUGCGCGUcCAu----GCCCAa-CGU-----CCCC- -5'
31060 5' -58 NC_006560.1 + 66827 0.66 0.861552
Target:  5'- gGCGCGUgaGguGGUgGCGGaGgggGgAGGGGg -3'
miRNA:   3'- -CGUGCG--CguCCA-UGCC-Caa-CgUCCCC- -5'
31060 5' -58 NC_006560.1 + 81459 0.66 0.861552
Target:  5'- uCGgGCGCGGc--CGGGagaGCGGGGGg -3'
miRNA:   3'- cGUgCGCGUCcauGCCCaa-CGUCCCC- -5'
31060 5' -58 NC_006560.1 + 32755 0.66 0.861552
Target:  5'- gGCGCGCcggcCGGGgucuCGGGguccgaggGCgAGGGGg -3'
miRNA:   3'- -CGUGCGc---GUCCau--GCCCaa------CG-UCCCC- -5'
31060 5' -58 NC_006560.1 + 85756 0.66 0.861552
Target:  5'- uGUugGCGUAGGcgcGCGGGUgGCGGc-- -3'
miRNA:   3'- -CGugCGCGUCCa--UGCCCAaCGUCccc -5'
31060 5' -58 NC_006560.1 + 58773 0.66 0.853991
Target:  5'- aGCuccagaGuCGUGGGUcCGGGggGCAGGGc -3'
miRNA:   3'- -CGug----C-GCGUCCAuGCCCaaCGUCCCc -5'
31060 5' -58 NC_006560.1 + 99293 0.66 0.853991
Target:  5'- gGCugGgGuCGGGggagguggUGGGgcGCGGGGGc -3'
miRNA:   3'- -CGugCgC-GUCCau------GCCCaaCGUCCCC- -5'
31060 5' -58 NC_006560.1 + 5093 0.66 0.853991
Target:  5'- -gGCGCGCcGcc-CGGGgucgGCGGGGGc -3'
miRNA:   3'- cgUGCGCGuCcauGCCCaa--CGUCCCC- -5'
31060 5' -58 NC_006560.1 + 50384 0.66 0.853991
Target:  5'- aGCugGCGUucgacgAGGgcgacuaccCGGGcgcgGCGGGGGc -3'
miRNA:   3'- -CGugCGCG------UCCau-------GCCCaa--CGUCCCC- -5'
31060 5' -58 NC_006560.1 + 102739 0.66 0.853991
Target:  5'- -aGCGCGUcgaagGGGUaguACGGGUccaUGCccGGGGc -3'
miRNA:   3'- cgUGCGCG-----UCCA---UGCCCA---ACGu-CCCC- -5'
31060 5' -58 NC_006560.1 + 147206 0.66 0.853991
Target:  5'- cCGC-CGgAGGcGCGGGggGCcGGGGc -3'
miRNA:   3'- cGUGcGCgUCCaUGCCCaaCGuCCCC- -5'
31060 5' -58 NC_006560.1 + 12414 0.66 0.853991
Target:  5'- cCGCGCGCGGccgacgaACGGGgaacUGCGucGGGGc -3'
miRNA:   3'- cGUGCGCGUCca-----UGCCCa---ACGU--CCCC- -5'
31060 5' -58 NC_006560.1 + 16615 0.66 0.853991
Target:  5'- aGCGCGUccagGCGGG-GCGGGUguacGCcGGGcGg -3'
miRNA:   3'- -CGUGCG----CGUCCaUGCCCAa---CGuCCC-C- -5'
31060 5' -58 NC_006560.1 + 21253 0.66 0.853991
Target:  5'- cGC-CGCGCAGGcGCGGuGaggGCGGcGGcGg -3'
miRNA:   3'- -CGuGCGCGUCCaUGCC-Caa-CGUC-CC-C- -5'
31060 5' -58 NC_006560.1 + 32423 0.66 0.846236
Target:  5'- gGCcCGCcCAGGgggcCGGGggGCcGGGGc -3'
miRNA:   3'- -CGuGCGcGUCCau--GCCCaaCGuCCCC- -5'
31060 5' -58 NC_006560.1 + 131868 0.66 0.846236
Target:  5'- cGCGCGCuGCGGGgcgcggucGCGGcGUacGCGGaGGGc -3'
miRNA:   3'- -CGUGCG-CGUCCa-------UGCC-CAa-CGUC-CCC- -5'
31060 5' -58 NC_006560.1 + 137631 0.66 0.846236
Target:  5'- gGCACGCggccGCGGGgcugGCGGaGcUGCuGGaGGa -3'
miRNA:   3'- -CGUGCG----CGUCCa---UGCC-CaACGuCC-CC- -5'
31060 5' -58 NC_006560.1 + 139272 0.66 0.846236
Target:  5'- -gGCGCGC-GGUcguCGGc--GCGGGGGg -3'
miRNA:   3'- cgUGCGCGuCCAu--GCCcaaCGUCCCC- -5'
31060 5' -58 NC_006560.1 + 9106 0.66 0.838294
Target:  5'- cGCGCGCGCGGcGcGCGGcacgucaUUGCgAGGGc -3'
miRNA:   3'- -CGUGCGCGUC-CaUGCCc------AACG-UCCCc -5'
31060 5' -58 NC_006560.1 + 34194 0.66 0.838294
Target:  5'- -gAUGgGguGGU-CGGGgggacggggGCGGGGGa -3'
miRNA:   3'- cgUGCgCguCCAuGCCCaa-------CGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.