miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31062 3' -72 NC_006560.1 + 54082 0.66 0.289459
Target:  5'- cGCc-CCCGGCCgCCgCCGGGCCcgagccCCCGa -3'
miRNA:   3'- uCGccGGGCUGGgGG-GGCCCGG------GGGC- -5'
31062 3' -72 NC_006560.1 + 4409 0.66 0.289459
Target:  5'- cGCGGCgUCG-CCCagCUCGGGCgCCCa -3'
miRNA:   3'- uCGCCG-GGCuGGGg-GGGCCCGgGGGc -5'
31062 3' -72 NC_006560.1 + 30941 0.66 0.289459
Target:  5'- --aGGCgCgGGCCCagaCCCGGGCCCa-- -3'
miRNA:   3'- ucgCCG-GgCUGGGg--GGGCCCGGGggc -5'
31062 3' -72 NC_006560.1 + 936 0.66 0.289459
Target:  5'- aGGgGaGCCCGGCagCCCC--GCCCCCGa -3'
miRNA:   3'- -UCgC-CGGGCUGggGGGGccCGGGGGC- -5'
31062 3' -72 NC_006560.1 + 5647 0.66 0.289459
Target:  5'- gGGCGGCgcccggCCGGCuCCgCCCCGGGgCgCgGg -3'
miRNA:   3'- -UCGCCG------GGCUG-GG-GGGGCCCgGgGgC- -5'
31062 3' -72 NC_006560.1 + 53641 0.66 0.289459
Target:  5'- nGGCGGCUCGuuGCCggggCCgCCCGGGa-CCCGu -3'
miRNA:   3'- -UCGCCGGGC--UGG----GG-GGGCCCggGGGC- -5'
31062 3' -72 NC_006560.1 + 56089 0.66 0.289459
Target:  5'- cGgGGCCCGcCCCCUCCGcccaGCgCaCCCGc -3'
miRNA:   3'- uCgCCGGGCuGGGGGGGCc---CG-G-GGGC- -5'
31062 3' -72 NC_006560.1 + 77403 0.66 0.289459
Target:  5'- uGCGGCCCGaggcggcgcgcGCgCgCCCGGcGCUgCCGu -3'
miRNA:   3'- uCGCCGGGC-----------UGgGgGGGCC-CGGgGGC- -5'
31062 3' -72 NC_006560.1 + 90305 0.66 0.289459
Target:  5'- uGgGGCCCGucGCCguggcgCUCCGGGCCCgCa -3'
miRNA:   3'- uCgCCGGGC--UGGg-----GGGGCCCGGGgGc -5'
31062 3' -72 NC_006560.1 + 128224 0.66 0.289459
Target:  5'- cGCGGCCUGuuCCUCCagcggCUGGGCCCa-- -3'
miRNA:   3'- uCGCCGGGCu-GGGGG-----GGCCCGGGggc -5'
31062 3' -72 NC_006560.1 + 3650 0.66 0.289459
Target:  5'- cGGCGGCCuCGGCgCCgCCGGGgaCgCGg -3'
miRNA:   3'- -UCGCCGG-GCUGgGGgGGCCCggGgGC- -5'
31062 3' -72 NC_006560.1 + 46840 0.66 0.289459
Target:  5'- gGGCGGCCCG-CCUCCCgCGucuCUCUCGa -3'
miRNA:   3'- -UCGCCGGGCuGGGGGG-GCcc-GGGGGC- -5'
31062 3' -72 NC_006560.1 + 32156 0.66 0.28584
Target:  5'- cGgGGCCgGGCgUCCCCGGcGCCgagggcgggucgaggCCCGc -3'
miRNA:   3'- uCgCCGGgCUGgGGGGGCC-CGG---------------GGGC- -5'
31062 3' -72 NC_006560.1 + 118283 0.66 0.283448
Target:  5'- uGGCGuCCgGGCUCCgCCaGGGCgCCCUGg -3'
miRNA:   3'- -UCGCcGGgCUGGGGgGG-CCCG-GGGGC- -5'
31062 3' -72 NC_006560.1 + 24048 0.66 0.283448
Target:  5'- cGCcGCCCGcccGCgCCCCCGG-CCCgCGg -3'
miRNA:   3'- uCGcCGGGC---UGgGGGGGCCcGGGgGC- -5'
31062 3' -72 NC_006560.1 + 25495 0.66 0.283448
Target:  5'- cGCcGCCCGcgacCCCCgCCCGcGaCCCCCGc -3'
miRNA:   3'- uCGcCGGGCu---GGGG-GGGC-CcGGGGGC- -5'
31062 3' -72 NC_006560.1 + 31872 0.66 0.283448
Target:  5'- gGGCGccCCCGGCCCgCCgcgcgaggCCGGGCgugugcccgccgCCCCGg -3'
miRNA:   3'- -UCGCc-GGGCUGGG-GG--------GGCCCG------------GGGGC- -5'
31062 3' -72 NC_006560.1 + 49999 0.66 0.283448
Target:  5'- cGCcGCCgGACgUCCacgggCCCGcGGCCCCCGc -3'
miRNA:   3'- uCGcCGGgCUG-GGG-----GGGC-CCGGGGGC- -5'
31062 3' -72 NC_006560.1 + 72916 0.66 0.283448
Target:  5'- uGCGGgagcgCCGGCCCCC--GGaGCCCCCc -3'
miRNA:   3'- uCGCCg----GGCUGGGGGggCC-CGGGGGc -5'
31062 3' -72 NC_006560.1 + 86858 0.66 0.283448
Target:  5'- cGGCGucgucCCCGuCCUCCCC--GCCCCCGc -3'
miRNA:   3'- -UCGCc----GGGCuGGGGGGGccCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.