miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31062 3' -72 NC_006560.1 + 67506 0.66 0.282852
Target:  5'- gAGuCGGCCCGcGCCgCCCaCGGcacccaaGCCCCgGc -3'
miRNA:   3'- -UC-GCCGGGC-UGGgGGG-GCC-------CGGGGgC- -5'
31062 3' -72 NC_006560.1 + 76888 0.66 0.281664
Target:  5'- cGUGGCCguugcccgccacgaCGGCCUCCUCGcccGCCUCCGg -3'
miRNA:   3'- uCGCCGG--------------GCUGGGGGGGCc--CGGGGGC- -5'
31062 3' -72 NC_006560.1 + 71412 0.66 0.281664
Target:  5'- gGGCgGGCCgGGCCCCCucauacgccucgaaCCGcGCCCaCCu -3'
miRNA:   3'- -UCG-CCGGgCUGGGGG--------------GGCcCGGG-GGc -5'
31062 3' -72 NC_006560.1 + 17852 0.66 0.279889
Target:  5'- cGGcCGGCCaucaGGCCCCUggucgcgcgcgccagCCagcGGGCgCCCCGg -3'
miRNA:   3'- -UC-GCCGGg---CUGGGGG---------------GG---CCCG-GGGGC- -5'
31062 3' -72 NC_006560.1 + 25864 0.66 0.277537
Target:  5'- cGgGGCCCGaugcacgcGCUCCCgCCGGcgugggccgcgcGCCUCCGa -3'
miRNA:   3'- uCgCCGGGC--------UGGGGG-GGCC------------CGGGGGC- -5'
31062 3' -72 NC_006560.1 + 51248 0.66 0.277537
Target:  5'- cGCGcGCCUGcACCCgCgCUCGGcGCaCCCCGc -3'
miRNA:   3'- uCGC-CGGGC-UGGG-G-GGGCC-CG-GGGGC- -5'
31062 3' -72 NC_006560.1 + 49812 0.66 0.277537
Target:  5'- cGCGGuCCCGGCguucuauaaagCCCCCCGacccgucccGCCCCgGu -3'
miRNA:   3'- uCGCC-GGGCUG-----------GGGGGGCc--------CGGGGgC- -5'
31062 3' -72 NC_006560.1 + 101834 0.66 0.277537
Target:  5'- cGUGGCCCGcgaGCgCCCCgCGcucguagcGGCCgCCCGc -3'
miRNA:   3'- uCGCCGGGC---UGgGGGG-GC--------CCGG-GGGC- -5'
31062 3' -72 NC_006560.1 + 129078 0.66 0.275783
Target:  5'- cGCGGCggCGACCCCggCgugucgcugcaggcCCGGGCCgCCGa -3'
miRNA:   3'- uCGCCGg-GCUGGGG--G--------------GGCCCGGgGGC- -5'
31062 3' -72 NC_006560.1 + 16415 0.66 0.271724
Target:  5'- cGCGGUgCCG-CCCgCCCGcgccGGCUCCCu -3'
miRNA:   3'- uCGCCG-GGCuGGGgGGGC----CCGGGGGc -5'
31062 3' -72 NC_006560.1 + 72386 0.66 0.271724
Target:  5'- uGGCGcuGCCCG-CCCCCCCacccuCCUCCGa -3'
miRNA:   3'- -UCGC--CGGGCuGGGGGGGccc--GGGGGC- -5'
31062 3' -72 NC_006560.1 + 141497 0.66 0.271724
Target:  5'- uGgGGCCCgcugGACCCcggCCCCGaGCCCCg- -3'
miRNA:   3'- uCgCCGGG----CUGGG---GGGGCcCGGGGgc -5'
31062 3' -72 NC_006560.1 + 10467 0.66 0.271724
Target:  5'- cGGgGGCCaCG-CCgCCUCGGGgCCCgGg -3'
miRNA:   3'- -UCgCCGG-GCuGGgGGGGCCCgGGGgC- -5'
31062 3' -72 NC_006560.1 + 20019 0.66 0.271724
Target:  5'- gGGUGGU---GCCCCUCCGaGGCCCgCGu -3'
miRNA:   3'- -UCGCCGggcUGGGGGGGC-CCGGGgGC- -5'
31062 3' -72 NC_006560.1 + 75113 0.66 0.271724
Target:  5'- cGCGGCUCGggGCCCUgggggCCGcGGCCgCCGa -3'
miRNA:   3'- uCGCCGGGC--UGGGGg----GGC-CCGGgGGC- -5'
31062 3' -72 NC_006560.1 + 82775 0.66 0.271724
Target:  5'- cGGgGGCCCGGCgCCCgcgcgCGGGCgCgCGg -3'
miRNA:   3'- -UCgCCGGGCUGgGGGg----GCCCGgGgGC- -5'
31062 3' -72 NC_006560.1 + 102420 0.66 0.271724
Target:  5'- cGCGGCCgCGGCguccgCCUCCUcGGCCgCCGc -3'
miRNA:   3'- uCGCCGG-GCUG-----GGGGGGcCCGGgGGC- -5'
31062 3' -72 NC_006560.1 + 114194 0.66 0.271724
Target:  5'- cGGCugGGCCCGGCCCagCCCCugccGGUCUuuGg -3'
miRNA:   3'- -UCG--CCGGGCUGGG--GGGGc---CCGGGggC- -5'
31062 3' -72 NC_006560.1 + 123432 0.66 0.271724
Target:  5'- cGCGGgCCGGCCCCU--GGGCCacgaCUGc -3'
miRNA:   3'- uCGCCgGGCUGGGGGggCCCGGg---GGC- -5'
31062 3' -72 NC_006560.1 + 13623 0.66 0.271724
Target:  5'- cAG-GGCCCGGuCCgCCgCCacguaGGcGCCCCCGc -3'
miRNA:   3'- -UCgCCGGGCU-GG-GG-GGg----CC-CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.