miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31062 5' -59.3 NC_006560.1 + 132235 0.66 0.782334
Target:  5'- -gCG-GGGCccuGGCGGGGcuguGGggCGAGGAc -3'
miRNA:   3'- aaGCaCCCG---CCGCUCC----UCuaGCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 9083 0.66 0.782334
Target:  5'- ----gGGGCGGCGGGGcGA-CGGcGGAg -3'
miRNA:   3'- aagcaCCCGCCGCUCCuCUaGCU-CCU- -5'
31062 5' -59.3 NC_006560.1 + 12702 0.66 0.782334
Target:  5'- -cCGUGuGGuCGGCGGGGgugGGggCGGGGc -3'
miRNA:   3'- aaGCAC-CC-GCCGCUCC---UCuaGCUCCu -5'
31062 5' -59.3 NC_006560.1 + 26818 0.66 0.782334
Target:  5'- -aCG-GGGCGcGCGGGG-GAcgcCGGGGAc -3'
miRNA:   3'- aaGCaCCCGC-CGCUCCuCUa--GCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 33632 0.66 0.782334
Target:  5'- ----gGGGgGGCGGGGGGcgcCGGGGGc -3'
miRNA:   3'- aagcaCCCgCCGCUCCUCua-GCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 36405 0.66 0.782334
Target:  5'- ---aUGGGgGGaUGGGGGGAUgGGGGGg -3'
miRNA:   3'- aagcACCCgCC-GCUCCUCUAgCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 36436 0.66 0.782334
Target:  5'- ---aUGGGgGGaUGGGGGGAUgGGGGGg -3'
miRNA:   3'- aagcACCCgCC-GCUCCUCUAgCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 146061 0.66 0.773203
Target:  5'- -cCGgGGGCGGCcucGGGGAGG-CG-GGAg -3'
miRNA:   3'- aaGCaCCCGCCG---CUCCUCUaGCuCCU- -5'
31062 5' -59.3 NC_006560.1 + 98445 0.66 0.773203
Target:  5'- -gCGgGcGGCGGCGAGGAcgGcgCgGAGGAc -3'
miRNA:   3'- aaGCaC-CCGCCGCUCCU--CuaG-CUCCU- -5'
31062 5' -59.3 NC_006560.1 + 15068 0.66 0.773203
Target:  5'- gUCgGUGGGgGGCGGGGGcucuGGccccuccgccUCGGGGGu -3'
miRNA:   3'- aAG-CACCCgCCGCUCCU----CU----------AGCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 65364 0.66 0.77044
Target:  5'- gUCGgcgGcGGCGGCGAaaacgcGGAacucggacauggcgGGUCGAGGGc -3'
miRNA:   3'- aAGCa--C-CCGCCGCU------CCU--------------CUAGCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 66830 0.66 0.76395
Target:  5'- -gCGUGaGGUGGUGGcGGAGGgggGAGGGg -3'
miRNA:   3'- aaGCAC-CCGCCGCU-CCUCUag-CUCCU- -5'
31062 5' -59.3 NC_006560.1 + 34913 0.66 0.76395
Target:  5'- -gUGUGGGgGGgGGGGAcGAgguuUCGGGGc -3'
miRNA:   3'- aaGCACCCgCCgCUCCU-CU----AGCUCCu -5'
31062 5' -59.3 NC_006560.1 + 1864 0.66 0.754585
Target:  5'- gUCGcGGGCGGgGGucgcgggcGGGGGUCGcGGGc -3'
miRNA:   3'- aAGCaCCCGCCgCU--------CCUCUAGCuCCU- -5'
31062 5' -59.3 NC_006560.1 + 62376 0.66 0.754585
Target:  5'- gUCGcgggGGGUGGCGGcuccGGuGcUCGAGGGg -3'
miRNA:   3'- aAGCa---CCCGCCGCU----CCuCuAGCUCCU- -5'
31062 5' -59.3 NC_006560.1 + 26655 0.66 0.754585
Target:  5'- -aCG-GGGCcGCGGGGGGGaCGGGGc -3'
miRNA:   3'- aaGCaCCCGcCGCUCCUCUaGCUCCu -5'
31062 5' -59.3 NC_006560.1 + 129457 0.66 0.754585
Target:  5'- -----cGGCGGCGGGGGGcUCgGAGGGc -3'
miRNA:   3'- aagcacCCGCCGCUCCUCuAG-CUCCU- -5'
31062 5' -59.3 NC_006560.1 + 147370 0.66 0.745115
Target:  5'- gUCGgggugGGGgGuGCGGGGGGggCgGAGGGg -3'
miRNA:   3'- aAGCa----CCCgC-CGCUCCUCuaG-CUCCU- -5'
31062 5' -59.3 NC_006560.1 + 73815 0.66 0.745115
Target:  5'- gUCGaggGGGCGGUGAaGGAGuacuuccugCGGGGc -3'
miRNA:   3'- aAGCa--CCCGCCGCU-CCUCua-------GCUCCu -5'
31062 5' -59.3 NC_006560.1 + 107183 0.66 0.745115
Target:  5'- -gCGagGGGCGGacccGGGAGAUCGAGc- -3'
miRNA:   3'- aaGCa-CCCGCCgc--UCCUCUAGCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.