miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31064 3' -56.7 NC_006560.1 + 144268 0.66 0.900517
Target:  5'- gCGUGCGcggggacccCCCUCcUC-CCGcCGGCGCUc -3'
miRNA:   3'- -GCAUGU---------GGGAGcAGuGGUaGCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 6087 0.66 0.900517
Target:  5'- --cGCGCCCUCG-CGUCGagGGCGCc -3'
miRNA:   3'- gcaUGUGGGAGCaGUGGUagCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 54691 0.66 0.900517
Target:  5'- --cGCGCCCUCGUaguCCGUgGGgGUc -3'
miRNA:   3'- gcaUGUGGGAGCAgu-GGUAgCCgCGa -5'
31064 3' -56.7 NC_006560.1 + 109228 0.66 0.900517
Target:  5'- aGUACGCgCg-GUUGCCGUCGGcCGUg -3'
miRNA:   3'- gCAUGUGgGagCAGUGGUAGCC-GCGa -5'
31064 3' -56.7 NC_006560.1 + 58388 0.66 0.899884
Target:  5'- --gGCGCCCgCGUCggcgcccccggggGCCgcGUCGGUGCUc -3'
miRNA:   3'- gcaUGUGGGaGCAG-------------UGG--UAGCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 24059 0.66 0.894083
Target:  5'- --cGCGCCCcCG--GCCcgCGGCGCUc -3'
miRNA:   3'- gcaUGUGGGaGCagUGGuaGCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 69669 0.66 0.894083
Target:  5'- --cGCGCCCgc--CACCccgggGUCGGCGCUg -3'
miRNA:   3'- gcaUGUGGGagcaGUGG-----UAGCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 42194 0.66 0.894083
Target:  5'- cCGUAC-UCCUCGUCcCCcccgagacccggGUCGcGCGCg -3'
miRNA:   3'- -GCAUGuGGGAGCAGuGG------------UAGC-CGCGa -5'
31064 3' -56.7 NC_006560.1 + 95240 0.66 0.892109
Target:  5'- gGUGCugccggcgACCUUCGcCGCCGUgucgaacggcuucgCGGCGCg -3'
miRNA:   3'- gCAUG--------UGGGAGCaGUGGUA--------------GCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 57932 0.66 0.890115
Target:  5'- gCGU-CGCCCgccuuccccccgugCG-CGCCcgCGGCGCg -3'
miRNA:   3'- -GCAuGUGGGa-------------GCaGUGGuaGCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 107273 0.66 0.887424
Target:  5'- gGUACACCCcCGccggcgagaUCACC-UCcGCGCUg -3'
miRNA:   3'- gCAUGUGGGaGC---------AGUGGuAGcCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 54138 0.66 0.887424
Target:  5'- gCGgGCGCCCUCGaCcCCAcCGGCGa- -3'
miRNA:   3'- -GCaUGUGGGAGCaGuGGUaGCCGCga -5'
31064 3' -56.7 NC_006560.1 + 102157 0.66 0.87345
Target:  5'- -aUGCGCCC--GUCGCggaaGUCGGCGCc -3'
miRNA:   3'- gcAUGUGGGagCAGUGg---UAGCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 18323 0.66 0.87345
Target:  5'- --gACGCCCgUCGUCgugcgcgcgGCCGaccugCGGCGCg -3'
miRNA:   3'- gcaUGUGGG-AGCAG---------UGGUa----GCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 120437 0.67 0.866143
Target:  5'- uCGcGCGCCC-CGUCgagGCCGU-GGUGCUg -3'
miRNA:   3'- -GCaUGUGGGaGCAG---UGGUAgCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 64962 0.67 0.866143
Target:  5'- --gGCGgCCUCGUCcCCcUCGGCGg- -3'
miRNA:   3'- gcaUGUgGGAGCAGuGGuAGCCGCga -5'
31064 3' -56.7 NC_006560.1 + 72363 0.67 0.85863
Target:  5'- --cGCgGCCCUCGcgggggCGCCGcUGGCGCUg -3'
miRNA:   3'- gcaUG-UGGGAGCa-----GUGGUaGCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 75648 0.67 0.85863
Target:  5'- -cUACACCCcCGagaaccagCGCCAccCGGCGCUg -3'
miRNA:   3'- gcAUGUGGGaGCa-------GUGGUa-GCCGCGA- -5'
31064 3' -56.7 NC_006560.1 + 30553 0.67 0.85863
Target:  5'- --gGCGCCCcgaggCGgCGCCG-CGGCGCg -3'
miRNA:   3'- gcaUGUGGGa----GCaGUGGUaGCCGCGa -5'
31064 3' -56.7 NC_006560.1 + 55615 0.67 0.85863
Target:  5'- --aGCACCgUCGgggCACCggUGGCGUUu -3'
miRNA:   3'- gcaUGUGGgAGCa--GUGGuaGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.