miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31065 3' -55.5 NC_006560.1 + 46984 0.66 0.905856
Target:  5'- cCCGCGCGCGucuCCUUCGAGgAGc--- -3'
miRNA:   3'- cGGCGCGCGCc--GGAGGCUUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 130533 0.66 0.905856
Target:  5'- cGCCGCGCG-GcGCCgcgCUGGGC-GUGGAc -3'
miRNA:   3'- -CGGCGCGCgC-CGGa--GGCUUGuUAUUU- -5'
31065 3' -55.5 NC_006560.1 + 101820 0.66 0.905228
Target:  5'- cGCCGCgaccacgGCGUGGCC-CgCGAGCGc---- -3'
miRNA:   3'- -CGGCG-------CGCGCCGGaG-GCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 78081 0.66 0.903967
Target:  5'- gGCCGCgGCGCucgggggccucgacGGCCcCCGGGCGc---- -3'
miRNA:   3'- -CGGCG-CGCG--------------CCGGaGGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 129015 0.66 0.902056
Target:  5'- uGCCGCuuccuGCGCGGCgcgcaccuggacgccCUCCGGGCc----- -3'
miRNA:   3'- -CGGCG-----CGCGCCG---------------GAGGCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 58051 0.66 0.899475
Target:  5'- cGCgCGCGaCGCGGCCgggUCaGGACAGc--- -3'
miRNA:   3'- -CG-GCGC-GCGCCGGa--GG-CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 48007 0.66 0.899475
Target:  5'- cGCC-CGC-CGGCCcCCGGGC-AUGGAg -3'
miRNA:   3'- -CGGcGCGcGCCGGaGGCUUGuUAUUU- -5'
31065 3' -55.5 NC_006560.1 + 37008 0.66 0.899475
Target:  5'- cGCCGCGgccuCGCcgGGCCUCCcGACGu---- -3'
miRNA:   3'- -CGGCGC----GCG--CCGGAGGcUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 34807 0.66 0.899475
Target:  5'- uCCGCgGCGCGGCCggggCCacgacagaaaGAACGAa--- -3'
miRNA:   3'- cGGCG-CGCGCCGGa---GG----------CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 22730 0.66 0.899475
Target:  5'- gGCCGCGCggccGCGGCCcgugcccCUGGACGc---- -3'
miRNA:   3'- -CGGCGCG----CGCCGGa------GGCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 120482 0.66 0.899475
Target:  5'- gGCCGCGCaucGCGGCCcacCUGcACGAg--- -3'
miRNA:   3'- -CGGCGCG---CGCCGGa--GGCuUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 60264 0.66 0.899475
Target:  5'- cCCGCGCcCGGCCgcccCCGGGCc----- -3'
miRNA:   3'- cGGCGCGcGCCGGa---GGCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 89999 0.66 0.899475
Target:  5'- cGCUGUGCGCGcGCCUCggccUGGACc----- -3'
miRNA:   3'- -CGGCGCGCGC-CGGAG----GCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 102895 0.66 0.899475
Target:  5'- gGCC-CGCGUGGCuCUCCG-GCGc---- -3'
miRNA:   3'- -CGGcGCGCGCCG-GAGGCuUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 110845 0.66 0.899475
Target:  5'- cGCCGcCGUGCGGUCcgaCCaGAACAGc--- -3'
miRNA:   3'- -CGGC-GCGCGCCGGa--GG-CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 114067 0.66 0.899475
Target:  5'- gGCCGUGCGCG-CCcCCGuGACGGa--- -3'
miRNA:   3'- -CGGCGCGCGCcGGaGGC-UUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 131319 0.66 0.899475
Target:  5'- gGCCGCggcccuGUGCGGCCUCggccuCGAGCc----- -3'
miRNA:   3'- -CGGCG------CGCGCCGGAG-----GCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 141607 0.66 0.899475
Target:  5'- cCCGC-CGCGGCCccgCCGGGgGAgGAAg -3'
miRNA:   3'- cGGCGcGCGCCGGa--GGCUUgUUaUUU- -5'
31065 3' -55.5 NC_006560.1 + 142295 0.66 0.899475
Target:  5'- cGgCGgGCGCGGCCggcgCCGGcCGcUGGAg -3'
miRNA:   3'- -CgGCgCGCGCCGGa---GGCUuGUuAUUU- -5'
31065 3' -55.5 NC_006560.1 + 99901 0.66 0.899475
Target:  5'- gGCgGCGCGggguucauguCGGCCUCgGGGCGc---- -3'
miRNA:   3'- -CGgCGCGC----------GCCGGAGgCUUGUuauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.