miRNA display CGI


Results 21 - 40 of 721 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 3' -70.1 NC_006560.1 + 81576 0.66 0.353417
Target:  5'- cGCCgCGUGCgGCCGgcguccuCGGGCCCcaugaaCCGGa- -3'
miRNA:   3'- -CGG-GCGCGgCGGU-------GCCCGGG------GGCCgc -5'
31066 3' -70.1 NC_006560.1 + 102160 0.66 0.349877
Target:  5'- cGCCCGuCGCggaagucggCGCCGCGGGCggugagggggaagUCGGCGg -3'
miRNA:   3'- -CGGGC-GCG---------GCGGUGCCCGgg-----------GGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 50077 0.66 0.347064
Target:  5'- aGCgaCGaCGCCGCC---GGCCCCgcCGGCGg -3'
miRNA:   3'- -CGg-GC-GCGGCGGugcCCGGGG--GCCGC- -5'
31066 3' -70.1 NC_006560.1 + 107224 0.66 0.347064
Target:  5'- cGCacagagaCGCGCCGCgacCugGGGCUCgUGGgGg -3'
miRNA:   3'- -CGg------GCGCGGCG---GugCCCGGGgGCCgC- -5'
31066 3' -70.1 NC_006560.1 + 118567 0.66 0.347064
Target:  5'- aGCCgGCGCuCGgucUCGCuGGUCCCgCGGCa -3'
miRNA:   3'- -CGGgCGCG-GC---GGUGcCCGGGG-GCCGc -5'
31066 3' -70.1 NC_006560.1 + 133309 0.66 0.347064
Target:  5'- gGCCaUGCGCagcagCGCCugGuGGCugauggCCUCGGCGa -3'
miRNA:   3'- -CGG-GCGCG-----GCGGugC-CCG------GGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 13271 0.66 0.347064
Target:  5'- cGCCCagGgGCCGgUcguACGGGCaCUCGGCGu -3'
miRNA:   3'- -CGGG--CgCGGCgG---UGCCCGgGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 13027 0.66 0.347064
Target:  5'- -aCCGgGCCGCgGCGgcaGGCCgUCGGgGg -3'
miRNA:   3'- cgGGCgCGGCGgUGC---CCGGgGGCCgC- -5'
31066 3' -70.1 NC_006560.1 + 32750 0.66 0.347064
Target:  5'- gGCCCggcGCGCCGgC-CGGGgUCUCGGgGu -3'
miRNA:   3'- -CGGG---CGCGGCgGuGCCCgGGGGCCgC- -5'
31066 3' -70.1 NC_006560.1 + 88691 0.66 0.347064
Target:  5'- cGCgCCGCgGCCgGCgGCGGcagagcgccGCUCCgCGGCGa -3'
miRNA:   3'- -CG-GGCG-CGG-CGgUGCC---------CGGGG-GCCGC- -5'
31066 3' -70.1 NC_006560.1 + 120475 0.66 0.347064
Target:  5'- aCCCGCggGCCGCgCAuCGcGGCCCaCCuGCa -3'
miRNA:   3'- cGGGCG--CGGCG-GU-GC-CCGGG-GGcCGc -5'
31066 3' -70.1 NC_006560.1 + 129371 0.66 0.347064
Target:  5'- cGCCCuGCaGCCGaCCcucaACGuGG-CCCCGGUGu -3'
miRNA:   3'- -CGGG-CG-CGGC-GG----UGC-CCgGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 131608 0.66 0.347064
Target:  5'- cCCCaggGCGCCGCC---GGCCCggCGGCGg -3'
miRNA:   3'- cGGG---CGCGGCGGugcCCGGGg-GCCGC- -5'
31066 3' -70.1 NC_006560.1 + 129022 0.66 0.344964
Target:  5'- uCCUGCGCggcgcgcaccuggaCGCCcucCGGGCCCagCGGCc -3'
miRNA:   3'- cGGGCGCG--------------GCGGu--GCCCGGGg-GCCGc -5'
31066 3' -70.1 NC_006560.1 + 68669 0.66 0.340101
Target:  5'- gGCCUGCGguucCUGgCGCGGGCCagcaaCUgGGCGa -3'
miRNA:   3'- -CGGGCGC----GGCgGUGCCCGG-----GGgCCGC- -5'
31066 3' -70.1 NC_006560.1 + 88453 0.66 0.340101
Target:  5'- cGCCCgcgggcGCGCgGuCCACGccGGCCCacaGGCGc -3'
miRNA:   3'- -CGGG------CGCGgC-GGUGC--CCGGGgg-CCGC- -5'
31066 3' -70.1 NC_006560.1 + 97571 0.66 0.340101
Target:  5'- -aCCGCGagcugaCGCUguggaACGaGGCCCgCCGGCu -3'
miRNA:   3'- cgGGCGCg-----GCGG-----UGC-CCGGG-GGCCGc -5'
31066 3' -70.1 NC_006560.1 + 99201 0.66 0.340101
Target:  5'- cGCCUgccgcgacggaaGCGaCCGCgGCGGGCUgcggCCCGGa- -3'
miRNA:   3'- -CGGG------------CGC-GGCGgUGCCCGG----GGGCCgc -5'
31066 3' -70.1 NC_006560.1 + 132604 0.66 0.340101
Target:  5'- aGgCCGCgagGCCGgCGCGGaaGUCCUCGGCc -3'
miRNA:   3'- -CgGGCG---CGGCgGUGCC--CGGGGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 145261 0.66 0.340101
Target:  5'- cCCCGUGggggaGCCcCGGcCCCCCGGCc -3'
miRNA:   3'- cGGGCGCgg---CGGuGCCcGGGGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.