miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 5' -58.1 NC_006560.1 + 39403 0.67 0.740908
Target:  5'- cUCGggcUCGGGGGCgCCGCGGCGCc-- -3'
miRNA:   3'- aAGCa--GGCCCUCGaGGUGCUGUGcac -5'
31066 5' -58.1 NC_006560.1 + 1986 0.68 0.71169
Target:  5'- cUCGgggCCGGGccAGCUCCAgGGCGgCGg- -3'
miRNA:   3'- aAGCa--GGCCC--UCGAGGUgCUGU-GCac -5'
31066 5' -58.1 NC_006560.1 + 135557 0.68 0.71169
Target:  5'- -gCGUCCGGGAGCUggcggggcaccgCCugGagcccGCGCGg- -3'
miRNA:   3'- aaGCAGGCCCUCGA------------GGugC-----UGUGCac -5'
31066 5' -58.1 NC_006560.1 + 18121 0.68 0.71169
Target:  5'- -gCGUCCGGGGccGCgCCGCGGCGaaugcaGUGc -3'
miRNA:   3'- aaGCAGGCCCU--CGaGGUGCUGUg-----CAC- -5'
31066 5' -58.1 NC_006560.1 + 2085 0.68 0.71169
Target:  5'- --gGUCCGGGGGC-CCGgcguCGGCGCGc- -3'
miRNA:   3'- aagCAGGCCCUCGaGGU----GCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 18832 0.68 0.701807
Target:  5'- -gCGUCgGGcGGCUCCGCGAggcCGCGUc -3'
miRNA:   3'- aaGCAGgCCcUCGAGGUGCU---GUGCAc -5'
31066 5' -58.1 NC_006560.1 + 42734 0.68 0.701807
Target:  5'- aUCG-CCGGGGGCgugUCCgcguGCGACucCGUGg -3'
miRNA:   3'- aAGCaGGCCCUCG---AGG----UGCUGu-GCAC- -5'
31066 5' -58.1 NC_006560.1 + 93043 0.69 0.67185
Target:  5'- -aCGUUCGGcGGCUUCGCGGCGCa-- -3'
miRNA:   3'- aaGCAGGCCcUCGAGGUGCUGUGcac -5'
31066 5' -58.1 NC_006560.1 + 138193 0.69 0.67185
Target:  5'- -gCGUCCcGGGGCUgCCuGCGGCACGa- -3'
miRNA:   3'- aaGCAGGcCCUCGA-GG-UGCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 108696 0.69 0.66179
Target:  5'- gUCGUCgaGGGGGggCCGCGACACc-- -3'
miRNA:   3'- aAGCAGg-CCCUCgaGGUGCUGUGcac -5'
31066 5' -58.1 NC_006560.1 + 70581 0.69 0.651706
Target:  5'- gUCG-CCGGGGGCaUCCACGccCGCGc- -3'
miRNA:   3'- aAGCaGGCCCUCG-AGGUGCu-GUGCac -5'
31066 5' -58.1 NC_006560.1 + 106604 0.69 0.641608
Target:  5'- gUCGUCCGGcGGGCccuguUCUACGcCACGg- -3'
miRNA:   3'- aAGCAGGCC-CUCG-----AGGUGCuGUGCac -5'
31066 5' -58.1 NC_006560.1 + 55839 0.7 0.611299
Target:  5'- gUCGcCCGGGuaguagucGGCggCCACG-CACGUGg -3'
miRNA:   3'- aAGCaGGCCC--------UCGa-GGUGCuGUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 70835 0.7 0.601216
Target:  5'- --gGUCCGGGAGgUCCucGCGG-ACGUGa -3'
miRNA:   3'- aagCAGGCCCUCgAGG--UGCUgUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 67881 0.71 0.541421
Target:  5'- -aCGUCCGGGuGGCgCCGCGACcCGa- -3'
miRNA:   3'- aaGCAGGCCC-UCGaGGUGCUGuGCac -5'
31066 5' -58.1 NC_006560.1 + 79439 0.71 0.540439
Target:  5'- -----gCGGGAcgaccccGCUCCGCGGCGCGUGa -3'
miRNA:   3'- aagcagGCCCU-------CGAGGUGCUGUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 46470 0.71 0.538477
Target:  5'- gUgGUCCGGGGGCUauUCGCGGCccgggaccccuagcGCGUGu -3'
miRNA:   3'- aAgCAGGCCCUCGA--GGUGCUG--------------UGCAC- -5'
31066 5' -58.1 NC_006560.1 + 32693 0.72 0.502662
Target:  5'- -cCGgggCCGGGGGCUCCGCccgagGGCGCGc- -3'
miRNA:   3'- aaGCa--GGCCCUCGAGGUG-----CUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 105682 0.72 0.493159
Target:  5'- -cCGUCCGGGAGCUC-GCGGCGa--- -3'
miRNA:   3'- aaGCAGGCCCUCGAGgUGCUGUgcac -5'
31066 5' -58.1 NC_006560.1 + 34790 0.72 0.456015
Target:  5'- gUCGggggCUGcGGGGUUCCGCGGCGCGg- -3'
miRNA:   3'- aAGCa---GGC-CCUCGAGGUGCUGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.