miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 3' -51.7 NC_006560.1 + 4774 0.66 0.988114
Target:  5'- gCGCGggGUCCGgguccgagucGGGGUCGgGgUCCGa -3'
miRNA:   3'- aGCGCa-UAGGUa---------UCCUAGCgCaAGGC- -5'
31069 3' -51.7 NC_006560.1 + 106478 0.66 0.986546
Target:  5'- cUCGCGUA-CCA---GAUUGCGUUCgCGc -3'
miRNA:   3'- -AGCGCAUaGGUaucCUAGCGCAAG-GC- -5'
31069 3' -51.7 NC_006560.1 + 139717 0.68 0.973594
Target:  5'- aCGCGggGUCgGggcGGAUCGCGcUCUGg -3'
miRNA:   3'- aGCGCa-UAGgUau-CCUAGCGCaAGGC- -5'
31069 3' -51.7 NC_006560.1 + 65159 0.68 0.973594
Target:  5'- cCGCGUcggCgGUGGuGAUCGCGgucCCGg -3'
miRNA:   3'- aGCGCAua-GgUAUC-CUAGCGCaa-GGC- -5'
31069 3' -51.7 NC_006560.1 + 15339 0.68 0.973594
Target:  5'- uUCGCGg--CCGgcgcggccGGGGUCGCGgugaggCCGg -3'
miRNA:   3'- -AGCGCauaGGUa-------UCCUAGCGCaa----GGC- -5'
31069 3' -51.7 NC_006560.1 + 33779 0.68 0.964481
Target:  5'- cUCGCGgggCCGUGGGGcgcgcgaagUCGCGggCgCGg -3'
miRNA:   3'- -AGCGCauaGGUAUCCU---------AGCGCaaG-GC- -5'
31069 3' -51.7 NC_006560.1 + 132273 0.69 0.957302
Target:  5'- uUCGCGUAUCCcuucgAGGA--GCGaUUCCu -3'
miRNA:   3'- -AGCGCAUAGGua---UCCUagCGC-AAGGc -5'
31069 3' -51.7 NC_006560.1 + 127133 0.69 0.953365
Target:  5'- gUCGCGUGcgugaccaCCAUGcGGGUCGCGgcgUCGa -3'
miRNA:   3'- -AGCGCAUa-------GGUAU-CCUAGCGCaa-GGC- -5'
31069 3' -51.7 NC_006560.1 + 46989 0.69 0.944774
Target:  5'- gCGCGUcUCCuucgAGGAgccCGCGggCCGc -3'
miRNA:   3'- aGCGCAuAGGua--UCCUa--GCGCaaGGC- -5'
31069 3' -51.7 NC_006560.1 + 115030 0.7 0.906958
Target:  5'- aUCGCG-AUCCccucgGGGAucUCGCGcgCCGa -3'
miRNA:   3'- -AGCGCaUAGGua---UCCU--AGCGCaaGGC- -5'
31069 3' -51.7 NC_006560.1 + 34481 0.7 0.906958
Target:  5'- -gGCGUGUgCGgggagccgGGGGUCGCGgcUCCGg -3'
miRNA:   3'- agCGCAUAgGUa-------UCCUAGCGCa-AGGC- -5'
31069 3' -51.7 NC_006560.1 + 94027 0.73 0.806467
Target:  5'- uUCGCGgaGUCCAUGGGccUCGCGcggCCGu -3'
miRNA:   3'- -AGCGCa-UAGGUAUCCu-AGCGCaa-GGC- -5'
31069 3' -51.7 NC_006560.1 + 67472 1.09 0.0079
Target:  5'- cUCGCGUAUCCAUAGGAUCGCGUUCCGu -3'
miRNA:   3'- -AGCGCAUAGGUAUCCUAGCGCAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.